RNA id: TU89157


Basic Information

Item Value
RNA id TU89157
length 2981
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G71283
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19218317 ~ 19222919 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATCATGAGACATTTTGTCCAGtggtttattctgtttttacaAGTCATGGCAGTAGCTGAACAATcctgggggagagggagataCATCAGATGCAGCTGAATACATAGAGCAAACCATGATGCTGGAGATGTTTTTTGAACCGATGAATTGAAAACCCAAATAAAAAGAGGACTCCAATTGAGATTTTCTTGCTCTGAAGGCATTTCCATTTAGAAGAAGTTTCATACTGCAACACTCACATCAGACAATTTGATACCTGTTGATAaaaatgttctgtaaaatgtCCTGATGGTCTCCGCCATTTACAATTCAGGTCATGAAGACTGGTGGTTGTCTGAGGGccaaaaagtgttttattttaaatttgacattacaatttaaaacaatgttttcattccaaacaaaagaacaaaatgaaGTCCAGTCCATATTCTCGTCTAAATCTTGATGAGAAGCAGCAGCCGGTTAGGATGGGTGGGGAGCAAAACGTGATATCCTGACGTGTTACTGAAAAACATTTCTCAATTTCCAGGCCATCCTTGAAAAAGGTCATGAATGGAGTGATGCCATCTTCACGGTAGTCTAATAATCCAACCATTCCATCGGGGTTCATGGTTTCACCTGTGAAGAACTATAGTTCTTCACATTGGCCATaattcttttgatttcttcttgTGCTCCGGCCATGAAGGGCTTTACTCTTTCTGGCTTAGTCTCTTCGAGTTTTGCTTTGATTCTgcccaaaacaaaaagcttaattaaaatatgatcttGCCACTTCAGAATAGAATTAAAATCACCCCCTCGTGTACAATTTCATTGTATTATGAataagggagagagaggaaagtggagggggaaaaaaagtgtggtGCATTCCTGTACTCCTCACATGAAGGCAGTGAATTAATATTCCTTCAGTCAGAAATTAAATCTTGCATGGCACTTGCATATCATAAATATCTGACAAGTTGTGTATACCTCAGCTCTGACCATAGGAAATAGATACCAGGGAAAGATGCTCACACCAATACAAGTTATTAAGGGGAATGTCAGATccttacatttgtaaatgtgtgtaagCAGACCAGATTAGGGAGCACTGCCAAAGCACTGGAGATTTCCTTTGTGGAGACGGTTCTGGTATCAGACTATATGGTCATCCCTTCAGTCTTATACAATTAGGTATCCCTGTCAAAATCCAGTAACTATGCTGAAGAAAgtgaggggtgtgtgtgtgtggaagtgaTCTGTTGGTGGGAATACTTGTCCCATACAAACTAGTTCTCCTAATTGAAGACAAATTAAAGGTACCGaattaaaaacactaacatAATTCTGCTAAGCTTTATACAAAAATGGTAATGTAGCCTGTAAGGGTGGACTTATTCGATGGATCAAATTTTGAAAgtctaaaattgaacttttataatgtttaataaatcaatgcaatgCCCTTTAAACTTTAGACAATTAAGCTGTACAAGTAGAACAGGATACTACTTTTTATCCACCCCACAAAATCTGACATTACCAGTCCTGGTGCTGTGCGCCTCTAATGGGAAACCAATGAGACCTAGTACTTCTTTTTGCAATGTGAAAGGTACATCTTCCAATTAGCTTCTTtgctttcaaaagcattttataGCCACAGTATTCACTCCTCAGCCGTCAACTGCTATTTATAGTATGGAATTGACAAACAACATCTGAGACTAGTTCATTTTAGGGTTTGGTTAGGTGACCTTTGGTCAAACTACACAGATGGCAAATCGATACTACGGAGTGCCAGGgctgcaacaaacaaaaacctgcaacAGAGGCAAATAAACCCCAAGTCTTTAATGTGAATGAGAAGTCAATATCTGAAACAGTTCTGGAGACACCATCATTTAAAGAAAGTGCTTACCCATGGACTTAAACCTTTTGTGGAGCTTTTCTGTATATTGATCCTACGATCCACAGCATTACTTCAAGCTGCTCACTATGGAAGATCAGATCACAAGCACCTTGCGTTTAATTCTTAATCCTACTACATGCTTGCTAATCAAGcataaatgtaatcattaaCTTAATTTTCCGTTGCTGTATATGCTACTGTAATTGCTTCAGTGTCAAATTTGACCGATTACATCACTTCACTCATGTTTCAACCAGTACATTTTCACAATTGCTTGTGAAATGGTTTTGTATATGCAAGGAAAATAAAGGTGGAAGTTTAATGTATGTTCTGGATATGTTGCCCCTTCTACAAGCCCTACAGGGATATTAAGATATTTCAAGTCAAAAGCATAATGCATAATAATCAATAAGCAAGTGTCTTCCTCTATTCAATCCAGGCAACTACAGAGAAGGTGCACAGAAAGCGCGAGGAAATCGCTTTTGCATCATCATATAAAAACCCTTAAAAGCCACTGAATTTGCTTTGGGTCTGTCAAAAGATGCAGTGAAGGCTGGAGATTTCTTCCAGCTTTTGGGAATCGACCGACACACATGCAGTACTTCCACACCCATCCATAGGCAAACTTACGCCTTCATGTAGTCTTTGATGTAGGCTTTGAAGGTGTCCTTTGTGAAGCCAGTTTCTTGAAGTTTGTGGTTTAAAACAATGTCTACTCCACTGACCGTGGACGCCTCGGCTCCCTCTTCCACCACTTCTGCCGAAGCATTCCCACCAATGAGAGCATCGTCAATGTCATCACTCCGGCTGACGACCTTCCCTCTACTTCTATTAAGATCCCATTGGGTGATTCCTTGATTTTGTAAATGTCCGAGAACATTTCATCCCCGATGATGTCCTTGTAGATGATCATTCTGTTGGATTGTGTTTCAGGACTTGCGTCAAAGatggctcctgctctccccgcTTGCGGACTCGGCTGAAAAGGACCGGTACACCCTTTCCCCCAACTTAGATACTAGCGGCCGTGATGACGTCATCCAGTAAAGTCTGGAAACAAACCATCCAACTAATTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89082 lncRNA upstream 170145 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 316156 18901225 ~ 18902161 (+) True G71183
TU88954 lncRNA upstream 525684 18688548 ~ 18692633 (+) True G71136
TU88779 lncRNA upstream 740289 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 749982 18465219 ~ 18468335 (+) True G71036
TU89246 lncRNA downstream 701983 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 963695 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 1701649 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 2088671 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2896664 22119583 ~ 22122533 (+) True G71452
AMCG00014612 mRNA upstream 1984 19214276 ~ 19216333 (+) True AMCG00014612
AMCG00014613 mRNA upstream 21478 19193419 ~ 19196839 (+) True AMCG00014613
AMCG00014607 mRNA upstream 27364 19184279 ~ 19190953 (+) True AMCG00014607
AMCG00014599 mRNA upstream 161854 19048293 ~ 19056463 (+) True AMCG00014599
AMCG00014598 mRNA upstream 170676 19045683 ~ 19047641 (+) True AMCG00014598
AMCG00014610 mRNA downstream 862 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014608 mRNA downstream 14651 19237570 ~ 19252607 (+) True AMCG00014608
AMCG00014609 mRNA downstream 62414 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014606 mRNA downstream 73497 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014611 mRNA downstream 96950 19319869 ~ 19330918 (+) True AMCG00014611
TU88725 other upstream 943957 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1769864 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2749204 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3085515 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3538529 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3632423 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8612584 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8645784 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9079454 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10628531 29851450 ~ 29851821 (+) True G72605

Expression Profile