RNA id: TU89357


Basic Information

Item Value
RNA id TU89357
length 1276
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G71462
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22228426 ~ 22230696 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAtacaatgttttcaaaactgAAGGAATTTTTAGGCCTTCAGATACatcttttaaagtttttttttttaaataaaggtctAAATGTGAAACTTCTTAAATTGCAGACTTTAACAAATGCAGGCAATTACTTCCTTACCTTTCAGTTTGAGATCATGTAGTGCTCTTGTTCAGGGAGCACATGTATGTTAACATACCTACCTGTAAAAGTGTGATGTCAGACATTTCTGGAACAATGGAATTTTGCTCTTTTTGTGAgaattggggggtgggggttttgaaatggtctttattttttctgtctttttttNNNNNTCTTAAATTGttattgcttctttttttttttcttttttttttgctgttatatAATAGACCATTTcaattctttattttacatctCAAATGAAGCCAAAAAAGGATTTAAGCAAAGCAGTCATACAATGCATCATTAAAAtccatacataaaatatatacacaaaaccaACAACCAAAAGGCTAATATAATCATAGTAAAGCCTACTATGCAAAGGAACTTGTgcagacatttttttcttcccgtttttctttcaaaaatcaaacaagtCTGATGGTTGTCTCTGAACGTCAAACATTCATAGTTATTCATGTATTACCATTCCATAATACGGAACCAAGCtctcaataaaacaaatctggtcAAATATCttagaccaaattaaaacaaaaacaaaacaaaacaaaaaacctataAAGGTTATGAACTGtatcacataataaaaaaagctttacacGTCTCCCAATATATGTACaacattatttcaaacaaaactcACACGTGTACTTTTGGCAGTACTACCTTTGCAAAActattcaatttttatttctaGTCAATCACtaactgttaaaaataacaattccaAAGAAATCAGGTATGCAGTCCGGGGATGATGGGAATATCCGGGACTATTCATCTTCTCCAAGACCGAGGTTCGTTGTCATCATCCTCTTCATCATCATCCTGAAGCAGAGCATCGTCTACCAAGGACTCCTCCTGAAACTAAGGCAAGTCAGGAATGAGACAGATCACACGTAAGGTTCAGCAATCGGACAAGCAGCTTCATTTCTAGAGTGTTCTCACTGGAGTACGTTCTCTCAGCGGAGGTTTCATTTTTCTCATCCACAAAGGTCATCTTACTGACAAGATTAGTTTGCTGCTTTCAGCACTGCTGGAGAAGTTAAAGGTGGCCTGTGAGCATGTTGCTTTACCCTTAGGAAATGGTCAAAACAGGACGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89355 lncRNA upstream 32551 22195619 ~ 22195875 (+) True G71460
TU89354 lncRNA upstream 39499 22188639 ~ 22188927 (+) True G71459
TU89346 lncRNA upstream 105893 22119583 ~ 22122533 (+) True G71452
TU89315 lncRNA upstream 916404 21311590 ~ 21312022 (+) True G71424
TU89305 lncRNA upstream 1303589 20924568 ~ 20924837 (+) True G71414
TU89423 lncRNA downstream 424662 22655358 ~ 22655614 (+) True G71518
TU89463 lncRNA downstream 1134064 23364760 ~ 23365002 (+) True G71557
TU89482 lncRNA downstream 1366422 23597118 ~ 23597323 (+) True G71574
TU89490 lncRNA downstream 1474467 23705163 ~ 23705434 (+) True G71581
TU89493 lncRNA downstream 1677689 23908385 ~ 23908649 (+) True G71584
AMCG00014624 mRNA upstream 1561246 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 2155356 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 2206732 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014617 mRNA upstream 2384384 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014605 mRNA upstream 2844107 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014632 mRNA downstream 17085 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014635 mRNA downstream 2152071 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 2461590 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 2657837 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 2697335 24928031 ~ 24937965 (+) True AMCG00014637
TU88725 other upstream 3954066 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 4779973 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 5759313 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 6095624 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 6548638 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 624646 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 5604807 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 5638007 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 6071677 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 7620754 29851450 ~ 29851821 (+) True G72605

Expression Profile