RNA id: TU89430



Basic Information


Item Value
RNA id TU89430
length 305
RNA type TUCP
GC content 0.52
exon number 1
gene id G71525
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22855342 ~ 22855646 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcagccaaggctcattgatgcacgtggggagcaaaggctggccggtgtggtccgatccaacagacgagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89423 lncRNA upstream 199728 22655358 ~ 22655614 (+) True G71518
TU89357 lncRNA upstream 624646 22228426 ~ 22230696 (+) True G71462
TU89355 lncRNA upstream 659467 22195619 ~ 22195875 (+) True G71460
TU89354 lncRNA upstream 666415 22188639 ~ 22188927 (+) True G71459
TU89346 lncRNA upstream 732809 22119583 ~ 22122533 (+) True G71452
TU89463 lncRNA downstream 509114 23364760 ~ 23365002 (+) True G71557
TU89482 lncRNA downstream 741472 23597118 ~ 23597323 (+) True G71574
TU89490 lncRNA downstream 849517 23705163 ~ 23705434 (+) True G71581
TU89493 lncRNA downstream 1052739 23908385 ~ 23908649 (+) True G71584
TU89505 lncRNA downstream 1476785 24332431 ~ 24333297 (+) True G71596
AMCG00014632 mRNA upstream 591342 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014624 mRNA upstream 2188162 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 2782272 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 2833648 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014617 mRNA upstream 3011300 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014635 mRNA downstream 1527121 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 1836640 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 2032887 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 2072385 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014643 mRNA downstream 2231368 25087014 ~ 25102638 (+) True AMCG00014643
TU88725 other upstream 4580982 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 5406889 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 6386229 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 6722540 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 7175554 15675631 ~ 15679788 (+) True AMCG00014490
TU90165 other downstream 4979857 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 5013057 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 5446727 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 6995804 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 7908705 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile