RNA id: TU89445


Basic Information

Item Value
RNA id TU89445
length 419
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G71540
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22984149 ~ 22984567 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacaccaatcagccataacattatgaccacctgcctaatattgtgtaggtccccttttgccgccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggccttcatggatcggacttgtttgtccagtacatcccacagatgctctattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctctgtggtccagctctgatgctcacgtgcccattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89444 lncRNA downstream 22079 22961869 ~ 22962070 (-) True G71539
TU89431 lncRNA downstream 128530 22855349 ~ 22855619 (-) True G71526
TU89417 lncRNA downstream 426486 22557383 ~ 22557663 (-) True G71512
TU89398 lncRNA downstream 677202 22306634 ~ 22306947 (-) True G71496
TU89373 lncRNA downstream 755435 22225924 ~ 22228714 (-) False AMCG00014630
TU89467 lncRNA upstream 428049 23412616 ~ 23412984 (-) True G71561
TU89491 lncRNA upstream 720632 23705199 ~ 23705420 (-) True G71582
TU89492 lncRNA upstream 720999 23705566 ~ 23705866 (-) True G71583
TU89500 lncRNA upstream 1095981 24080548 ~ 24080747 (-) True G71591
TU89502 lncRNA upstream 1171163 24155730 ~ 24156148 (-) True G71593
AMCG00014631 mRNA downstream 651339 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014630 mRNA downstream 739234 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014628 mRNA downstream 858783 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 870518 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014627 mRNA downstream 1204648 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014633 mRNA upstream 619042 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 780511 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 1915524 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014640 mRNA upstream 1929736 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014641 mRNA upstream 1976379 24960946 ~ 24961689 (-) True AMCG00014641
TU87063 other downstream 11321656 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 12186002 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 13666982 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 14599925 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 14825559 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 5345172 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 6404723 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 9278600 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 9612895 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 9612895 32597462 ~ 32619149 (-) False G73127

Expression Profile