RNA id: TU89467


Basic Information

Item Value
RNA id TU89467
length 347
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G71561
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 23412616 ~ 23412984 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtacatgtgctttcttgagcatggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtccaagatcctcctgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgtgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcctTTAGcacattccagccttgtgtaggtctacagtCTTGTCCCTgtcatccttggacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89445 lncRNA downstream 428049 22984149 ~ 22984567 (-) True G71540
TU89444 lncRNA downstream 450546 22961869 ~ 22962070 (-) True G71539
TU89431 lncRNA downstream 556997 22855349 ~ 22855619 (-) True G71526
TU89417 lncRNA downstream 854953 22557383 ~ 22557663 (-) True G71512
TU89398 lncRNA downstream 1105669 22306634 ~ 22306947 (-) True G71496
TU89491 lncRNA upstream 292215 23705199 ~ 23705420 (-) True G71582
TU89492 lncRNA upstream 292582 23705566 ~ 23705866 (-) True G71583
TU89500 lncRNA upstream 667564 24080548 ~ 24080747 (-) True G71591
TU89502 lncRNA upstream 742746 24155730 ~ 24156148 (-) True G71593
TU89670 lncRNA upstream 2075242 25488226 ~ 25490651 (-) True G71723
AMCG00014631 mRNA downstream 1079806 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014630 mRNA downstream 1167701 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014628 mRNA downstream 1287250 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 1298985 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014627 mRNA downstream 1633115 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014633 mRNA upstream 190625 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 352094 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 1487107 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014640 mRNA upstream 1501319 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014641 mRNA upstream 1547962 24960946 ~ 24961689 (-) True AMCG00014641
TU87063 other downstream 11750123 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 12614469 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 14095449 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 15028392 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 15254026 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 4916755 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 5976306 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 8850183 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 9184478 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 9184478 32597462 ~ 32619149 (-) False G73127

Expression Profile