RNA id: TU89492


Basic Information

Item Value
RNA id TU89492
length 301
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G71583
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 23705566 ~ 23705866 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgactttgacaagggccaaattgtgatggctagatgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagttcctatcaaaagtggtctgtagcgtaaggtacacttataaatttcaattaaagaagtgaatttatagtatcaccttatcacgaatcctggaatcttgtagaactcaatttctgtaataattggacgcagacaccaattccaaagatataaattgtcaaatgtattcaaaaacaaagactaaatgtagcactacactaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89491 lncRNA downstream 146 23705199 ~ 23705420 (-) True G71582
TU89467 lncRNA downstream 292582 23412616 ~ 23412984 (-) True G71561
TU89445 lncRNA downstream 720999 22984149 ~ 22984567 (-) True G71540
TU89444 lncRNA downstream 743496 22961869 ~ 22962070 (-) True G71539
TU89431 lncRNA downstream 849947 22855349 ~ 22855619 (-) True G71526
TU89500 lncRNA upstream 374682 24080548 ~ 24080747 (-) True G71591
TU89502 lncRNA upstream 449864 24155730 ~ 24156148 (-) True G71593
TU89670 lncRNA upstream 1782360 25488226 ~ 25490651 (-) True G71723
TU89673 lncRNA upstream 1802731 25508597 ~ 25508870 (-) True G71726
TU89674 lncRNA upstream 1825072 25530938 ~ 25533180 (-) True G71727
AMCG00014633 mRNA downstream 100835 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014631 mRNA downstream 1372756 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014630 mRNA downstream 1460651 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014628 mRNA downstream 1580200 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 1591935 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014634 mRNA upstream 59212 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 1194225 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014640 mRNA upstream 1208437 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014641 mRNA upstream 1255080 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014642 mRNA upstream 1298639 25004505 ~ 25073710 (-) True AMCG00014642
TU87063 other downstream 12043073 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 12907419 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 14388399 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 15321342 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 15546976 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 4623873 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 5683424 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 8557301 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 8891596 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 8891596 32597462 ~ 32619149 (-) False G73127

Expression Profile