RNA id: TU89493


Basic Information

Item Value
RNA id TU89493
length 265
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G71584
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 23908385 ~ 23908649 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctcctctgttccagggtgaaaaggttcagttccctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtacacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctaacatcctgtttgccttttttattgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89490 lncRNA upstream 202951 23705163 ~ 23705434 (+) True G71581
TU89482 lncRNA upstream 311062 23597118 ~ 23597323 (+) True G71574
TU89463 lncRNA upstream 543383 23364760 ~ 23365002 (+) True G71557
TU89423 lncRNA upstream 1252771 22655358 ~ 22655614 (+) True G71518
TU89357 lncRNA upstream 1677689 22228426 ~ 22230696 (+) True G71462
TU89505 lncRNA downstream 423782 24332431 ~ 24333297 (+) True G71596
TU89508 lncRNA downstream 614996 24523645 ~ 24532961 (+) True G71598
TU89583 lncRNA downstream 1174010 25082659 ~ 25082878 (+) True G71662
TU89593 lncRNA downstream 1200507 25109156 ~ 25109378 (+) True G71670
TU89672 lncRNA downstream 1624693 25533342 ~ 25534154 (+) True G71725
AMCG00014632 mRNA upstream 1644385 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014624 mRNA upstream 3241205 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 3835315 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014618 mRNA upstream 3886691 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014617 mRNA upstream 4064343 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014635 mRNA downstream 474118 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 783637 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014638 mRNA downstream 979884 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014637 mRNA downstream 1019382 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014643 mRNA downstream 1178365 25087014 ~ 25102638 (+) True AMCG00014643
TU89430 other upstream 1052739 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 5634025 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 6459932 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 7439272 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 7775583 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 3926854 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 3960054 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 4393724 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 5942801 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 6855702 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile