RNA id: TU89670


Basic Information

Item Value
RNA id TU89670
length 2195
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G71723
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25488226 ~ 25490651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aataataataataataataataataaatgaacacTTGGGCGTTGTCATTTCAGAAACAATACAAACGTTACACAAAACCCAGTGACAGATAAACAATTTAGAAGCTGGACTTCAAAACTACATATTCTCTTACAggtgtaataaaatacaaattacaggtTATGGTTCAACGACAGACAATTTATACATGCATGCTTAAGTTTTTGCAGGGGATTTTCTTCCAAGGATAGGGACTTCCAATTTGCTTCGGTGGGAGAGcaatttcttttaaaacaactgtaagaggtgtgtttttttagtttttttcacttTAAGTGATATCAGAAAAAGAAGGGAGGAACCTACCAATGCTGGTAGCAGGAGTCATGCACAACACTGACCCTGTATATCATGCAGTGAAAAGTGAATAGAGGTTAATAAGGGAGAAAAAGATTAGCTGGAGTTCTTGTTTTGAGCATGCTTTCCATTCAAAGTGTTGCCATTTGGTTCATTTGTAGTCTTTGTTATGCATTTCACAAGAAAAAAGTGTCCCTTGGTCGTACAGTAGGGTTCATATCGTTACAAAGATGCCAATTCATCAGTAAAAGTGATCAGAAAAGAatcagacagaaaaacaaaacaaaatcccaaaaAACTACAAATGACCCGGAAACAAGAAAGAGTTATAACAGAGCAAACTGAGCTTCAACCAAGATTTCAACTGTCATCATCAATGCAGTGACATGCCACTTTATCACATGCCCTTTGCTAAATATTGATGGAGATACTGGATTAAAAATAGGCACAGCATTAAGATAAAGCTTCTACCAGTGTTATAGGCAGCAGGGAAATATGTTGCACATACTGATGTAACTAGAACGTAGATTAAATGATGGGTATAaagatgtaatattaaaaagaaatgctaAATAGTAAGAATAACGTATTAAATCAGTGTAAAAACGCTAAAAAGACCGCTGGGGACGTAAACTGTGGATGACCCCaggcaaatgtttttaaattctcaatttttgtttggtttggtttggttttttaAGTAGCGGACAAAGAAGAGAGGGTCACATGCTACTCAGTCTGGAGTACATTTAATGCAGAAGGGACgtttatctaaaaaaaaaacatgtacatacgTTTTAACAGTATAAGTTTCTGATAACACTTAATGCAGATGGTTGTTAAAGCAGTATTTACCAAGTTAGTACTCCTTTACTTTTTCCTTTGCAGCTACACCAGTTAATCAAAGTACAGAGGAGTTGTTGTTTCCCTATATATGAGCAAGCGCTTTACAAGTATGCAAGAAAGTCCCAAGTGCATGTGTgctaattaaactttttttttgtgattaattatcaaccatgttttacaaaaaaaaaaggtttacaaAGCATATATCCCAATCAAACAGTTGATTTTGTACACCTAATTACATCTTGCAGCAGTAGTTTTATTGATAGTACACACCATTGAGATCAAAGTTTAAAACTGCTAGCATTTCGCCACAATATTTTGGGCTACattgttgaattaaaaaaacaaaaaaaaacaaaaaaaacattgcataaaTATGTCAAAACTACTTTATATCTTGTAATGCAAGGCGTTTCCTTCTAAGGATTTTTTTCATCATATCTTCGTGCTGCTTAGAAACCCACGATTACTTCCATGCGTGGCTGTCAAACCACATGGAATGCAAATACCTGTGGGAATGAATGCTGTAGGCTGTTGTAACTGTGCATTGGCCAGAGCCTGCTGGTAGTGCAAAACACTGGGGTTAAAGACTGTGCTGGCACCATTGCTTTTTTCAAGTGCTGGTCTCTTTGGTAGGGGCTGCAGGATGCCGGGTGGGAAAGCCTGTGaagcagaaatgtaatattagcAGAACAATGTAACAAAACCAAATGCCAATTCATCAACTCTATTACTTACAAGAGACATTGTTTTATCATATGCGTATCAgttatttatagctaatttatacatgaaataaatcacaatggTATAATaggtctttttaaatgttcaaagaAGTATATAGAAGAGTGTTTAAAAATCTGCACAGCAATagaaaatgcaatattaaataaGGTAGTTAGACATTTTATGATTAACTAAAACCAAAATCACATTCACTTTAAAATTTTAATCTTTGCTCTGTGAAGTGCAggattactttatttatttttattataaagcaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89502 lncRNA downstream 1332078 24155730 ~ 24156148 (-) True G71593
TU89500 lncRNA downstream 1407479 24080548 ~ 24080747 (-) True G71591
TU89492 lncRNA downstream 1782360 23705566 ~ 23705866 (-) True G71583
TU89491 lncRNA downstream 1782806 23705199 ~ 23705420 (-) True G71582
TU89467 lncRNA downstream 2075242 23412616 ~ 23412984 (-) True G71561
TU89673 lncRNA upstream 17946 25508597 ~ 25508870 (-) True G71726
TU89674 lncRNA upstream 40287 25530938 ~ 25533180 (-) True G71727
TU89693 lncRNA upstream 100167 25590818 ~ 25591551 (-) True G71740
TU89807 lncRNA upstream 536884 26027535 ~ 26028500 (-) True G71835
TU89847 lncRNA upstream 730543 26221194 ~ 26221397 (-) True G71871
AMCG00014650 mRNA downstream 89392 25397830 ~ 25398834 (-) True AMCG00014650
AMCG00014647 mRNA downstream 248640 25165946 ~ 25239586 (-) True AMCG00014647
AMCG00014645 mRNA downstream 344858 25130338 ~ 25143368 (-) True AMCG00014645
AMCG00014642 mRNA downstream 414516 25004505 ~ 25073710 (-) True AMCG00014642
AMCG00014641 mRNA downstream 526537 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014656 mRNA upstream 218983 25709634 ~ 25729632 (-) True AMCG00014656
AMCG00014659 mRNA upstream 263197 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014658 mRNA upstream 284318 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014663 mRNA upstream 410798 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014662 mRNA upstream 411253 25901904 ~ 26035827 (-) True AMCG00014662
TU87063 other downstream 13825733 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14690079 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 16171059 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17104002 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 17329636 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 2839088 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3898639 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 6772516 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 7106811 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 7106811 32597462 ~ 32619149 (-) False G73127

Expression Profile