RNA id: TU89672


Basic Information

Item Value
RNA id TU89672
length 813
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G71725
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25533342 ~ 25534154 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATAAGAGTcccttattttattaacttcCCATTTTTTCACTTCTACAGGTATTGTTGTGTGGCACCACTATCTGTTTATGAAGCTATTGATAttgaactaattaaaaaatattaaaagctaCATTTTCCTGGTTTCTATTTTCATACTTGTGGTAAAGCATATCTAAAGGCAGTTTTGGTGTTGGGGGTTTTCATTTCTCCTCACGGTTGACGCCCTTTGTAACTGAACTGTTGAACGTCATGATGTAAAGCATGTAGACTGCATTCCTCTGGCTAGCTGTGCTGTAAAACTTGCCCATCGTTATTGCCATACAGCTAGTCCCAGAAATGTCCGACCCGGGAAATGATTCACTCTTCTGCTTTCtgacaaatgtttaaattggaaACCACTCTCCAACATCTCCTAGTCCGGCGATGTACAGTTCGCTATGACCGCTACAGCTAAGAATCTTGTTTAAATGAAtcaagctgaaaaaaaaatacattttatgtgtgtgtcGGTTTTTTAAACCCTGATTTTGCAACATACAATtaaggaaatgtgtttaaagcTTGTGAAATAACTGTACTTGGTGCCATTCTTAAATCCAGGTGCTCTGCTGCAATTGGTGAAAAACTTCTAGATATGTATCAGATTCTTTCAGCTTTCACAAAGGCAGTGGGACAAACAAAGGCTTAAATTGTGCttgaaggaataaaaaaattCTTTGATGCAACCCTGGAAGCATCCATGGACAGAAATTACATTATCAGTGgtccttttgaaaatgttatatacGCTGCTAAATTGATTCTAGAAGCTTGATTACTGCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89593 lncRNA upstream 423964 25109156 ~ 25109378 (+) True G71670
TU89583 lncRNA upstream 450464 25082659 ~ 25082878 (+) True G71662
TU89508 lncRNA upstream 1000381 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 1200045 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 1624693 23908385 ~ 23908649 (+) True G71584
TU89720 lncRNA downstream 171304 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 211649 25745803 ~ 25748408 (+) True G71772
TU89742 lncRNA downstream 236055 25770209 ~ 25770489 (+) True G71784
TU89783 lncRNA downstream 418079 25952233 ~ 25959702 (+) True G71817
TU89798 lncRNA downstream 476645 26010799 ~ 26011000 (+) True G71826
AMCG00014653 mRNA upstream 2493 25522226 ~ 25530849 (+) True AMCG00014653
AMCG00014651 mRNA upstream 28339 25479791 ~ 25505003 (+) True AMCG00014651
AMCG00014649 mRNA upstream 159270 25373386 ~ 25374072 (+) True AMCG00014649
AMCG00014648 mRNA upstream 287381 25245413 ~ 25245961 (+) True AMCG00014648
AMCG00014644 mRNA upstream 369707 25149803 ~ 25163635 (+) True AMCG00014644
AMCG00014652 mRNA downstream 31003 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014654 mRNA downstream 41086 25575240 ~ 25592567 (+) True AMCG00014654
AMCG00014657 mRNA downstream 74834 25608988 ~ 25630854 (+) True AMCG00014657
AMCG00014655 mRNA downstream 126191 25660345 ~ 25698928 (+) True AMCG00014655
AMCG00014661 mRNA downstream 400327 25934481 ~ 25941543 (+) True AMCG00014661
TU89430 other upstream 2677696 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7258982 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8084889 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9064229 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9400540 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2301349 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2334549 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2768219 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4317296 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5230197 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile