RNA id: TU89674


Basic Information

Item Value
RNA id TU89674
length 2243
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G71727
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25530938 ~ 25533180 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcgctttttttttttattattatcattattgttatttcagTCTTTAGATACCACTGCAATATGTCCTTGACATGAAGGGGggaaatgtgtgatttgtacttattttaacTTGGCATCAAACATCTTCTGAGTCATACACAGTAATAGAAATAGGACACGAAGCAAGATGTACTAAGGTAGAAAATGAATGTTGGATAATGGCATTTCACATTGTGTTGATATAATGTCCTGGGGGTGGTATCCGTGACTGGAAGTAAATTGTTTGGTCCCAAGTTaaaattgctttgtattttccCATATTCTGACAGTTGCAGAAAAGTCCTATTTCTTAAAGGAAAAGACATGTATAGAgcaaaagaaataataataataaaaataaaaacaaatccaaaaaacaaaaagagagaaactgtATGCCCGTATTCCAAGTTTAACAACTTGCTCCAggcaccaaaaaagaaaaagtcctgttagtatttatttttcataaaactaTAGTGTGTTTCCCTCTGTGGTTTAGCATTATAAATGGCTCAataaagcacagaaacacaaaaatgttttgcatgagTTCCTTTGAGATTTCTCCAACATTCAGCCCCTCCCCCCTGAAAaggtgagggggaaaaaaagactgtACTGTAGAAGTAATGCCTTTTTTACACAAGAGCTGTAACACTGGTTGAAAGTAGCAGAGTTGTGTTGTAGAcgtcattttctgttttgttttttttctttcgaGTGTGTAGGTGCTTAACAAACAGTGTCACAAATCATCAGTGGGAGTGGAAAGGGAGCTGGAGGTGGGAGAGTAAATGtccacataaaaatataaaatatactatGAGAATGGTAagaagattttttcttttttattccccCATGCCAACATAGATGTGTCATTCACACAACCTCCATTTCCTGAGGTCTGGGTCAGGCCTAAGTGGGTTCTGTTTGCGGACTTGACTGTTTAAAAATCGCTAGGAGTGAGGTCCTCTTGTCATTAACTAGACATGCATATGGTCAACGATTCCACTACGAAGTGCTGCGCGGTGTCTTACGAACAGTTAGCACCTtccaaaatatttacagagatttgcagctatatttattattatgatgaattTATTATGATCATCAACACCACCACAAGCACCGCCATCGTCACcctaattataatatatatttttttcaattgtaattaTTGAGAACGGATGAAGAGCAACGGGATTTGACCAAATCTTCGCCGGCCTGCGAGGCTTTTCTTCCGTCGAAGCTCAGCTGGCACTACCATAGCTGCGACACTTCTCCCGACGTTGATCGGAAAACGGAAAATCTAATAACGGAAAGTACGGCCGCCAGGAATTCTGCTTCGCTTGATGACAACCCCGTTAACATCCAGCCCTGTATAAGAGGCACAGGCGTACTGGAAAAACGCATCTCTTTCCGTCTGAGGAAAACCCCATTGGCAAAAGTGTTCAGGTGCAAAAATGGCAAGTCTGCAAAATGCTTCGCCTTCTCGACACTCTTTTTGTCAAAGCGCAGTggtgttgggggaaaaaaacaacctgtaaacaaaacacatgccTGCGATCTCTAGACGGGGggagaatattaaataaaacaaaataaaaacaggtttaCAATGGAAACCCTGACCATTCTTGCGTGCCCCTtgcttcaaaaaacaaatacggAAACCTTCTTTTGTTGGCCTCCGATGTTCCTTCTGCAATGACTGAAAAGCCTTTCAGCTTGTTAGGTGGGGTCTCCTTTCCTGCACAGAAACCGGGTCCACAAATCAATTTCTCATCAATGTTTCAACAAGGAGATCACAGggataatttttttcttctccttggtTTGTAGAGTAGAAATCGGCTTCTCTGACAGGGTGACACCGGACACTGCTCTCCAACGAACAAGAAAAGgttcacttaaaaaataaaactactcccccccccaaaaaaaacaaaccagacaaCAGAACCAAAAGTAACAATTCGCTCCACAATCCCACACCTTCATTCCACAGAAACTACTTTTACAATTTCCTCGAGGCTCAAAGTGTCTTGAGCAGAAAAGATGAAAGACAAGTGCTGCTGATCCATTGTTAGGCATTCCCTCTCCTGTGGTTTGTTTCAATTCCCTCAACTGTAGTCTTTTGTTAGTTTCTCTTCCCCCcccattttcttttacttcctCATCACCATTTTAAGACTGGTTATAAGCATCAAAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89673 lncRNA downstream 22068 25508597 ~ 25508870 (-) True G71726
TU89670 lncRNA downstream 40287 25488226 ~ 25490651 (-) True G71723
TU89502 lncRNA downstream 1374790 24155730 ~ 24156148 (-) True G71593
TU89500 lncRNA downstream 1450191 24080548 ~ 24080747 (-) True G71591
TU89492 lncRNA downstream 1825072 23705566 ~ 23705866 (-) True G71583
TU89693 lncRNA upstream 57638 25590818 ~ 25591551 (-) True G71740
TU89807 lncRNA upstream 494355 26027535 ~ 26028500 (-) True G71835
TU89847 lncRNA upstream 688014 26221194 ~ 26221397 (-) True G71871
TU89849 lncRNA upstream 702231 26235411 ~ 26235615 (-) True G71873
TU89850 lncRNA upstream 710364 26243544 ~ 26243813 (-) True G71874
AMCG00014650 mRNA downstream 132104 25397830 ~ 25398834 (-) True AMCG00014650
AMCG00014647 mRNA downstream 291352 25165946 ~ 25239586 (-) True AMCG00014647
AMCG00014645 mRNA downstream 387570 25130338 ~ 25143368 (-) True AMCG00014645
AMCG00014642 mRNA downstream 457228 25004505 ~ 25073710 (-) True AMCG00014642
AMCG00014641 mRNA downstream 569249 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014656 mRNA upstream 176454 25709634 ~ 25729632 (-) True AMCG00014656
AMCG00014659 mRNA upstream 220668 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014658 mRNA upstream 241789 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014663 mRNA upstream 368269 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014662 mRNA upstream 368724 25901904 ~ 26035827 (-) True AMCG00014662
TU87063 other downstream 13868445 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14732791 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 16213771 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17146714 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 17372348 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 2796559 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3856110 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 6729987 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 7064282 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 7064282 32597462 ~ 32619149 (-) False G73127

Expression Profile