RNA id: TU89798


Basic Information

Item Value
RNA id TU89798
length 202
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G71826
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26010799 ~ 26011000 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcagtgtcttggtggagtcagaGTTTTGATGttgcattgttgtagatatatttaatgagTGATTTTAGGTTTCCTCAAtgatttgatttcttagagctctgatgactgagtttgtatatattgaatcaactGCTTTCTCttagtcaacaaagcccagacACAGAGGAAGCCCATATTCTCGGCATCTTTCAAATACTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89783 lncRNA upstream 51097 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 240310 25770209 ~ 25770489 (+) True G71784
TU89720 lncRNA upstream 248057 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA upstream 262391 25745803 ~ 25748408 (+) True G71772
TU89672 lncRNA upstream 476645 25533342 ~ 25534154 (+) True G71725
TU89834 lncRNA downstream 220219 26231219 ~ 26231565 (+) True G71859
TU89946 lncRNA downstream 893877 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 941296 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 1015775 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 1464064 27475064 ~ 27479444 (+) True G72072
AMCG00014661 mRNA upstream 69256 25934481 ~ 25941543 (+) True AMCG00014661
AMCG00014655 mRNA upstream 311871 25660345 ~ 25698928 (+) True AMCG00014655
AMCG00014657 mRNA upstream 379945 25608988 ~ 25630854 (+) True AMCG00014657
AMCG00014654 mRNA upstream 418232 25575240 ~ 25592567 (+) True AMCG00014654
AMCG00014652 mRNA upstream 436791 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014660 mRNA downstream 25433 26036433 ~ 26052543 (+) True AMCG00014660
AMCG00014665 mRNA downstream 74859 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014664 mRNA downstream 157461 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014667 mRNA downstream 192883 26203883 ~ 26244458 (+) True AMCG00014667
AMCG00014668 mRNA downstream 307031 26318031 ~ 26335361 (+) True AMCG00014668
TU89430 other upstream 3155153 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7736439 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8562346 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9541686 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9877997 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1824503 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1857703 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2291373 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3840450 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4753351 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile