RNA id: TU89807


Basic Information

Item Value
RNA id TU89807
length 966
lncRNA type intronic
GC content 0.44
exon number 1
gene id G71835
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26027535 ~ 26028500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACCAGTATATAGCCAGCTCTGGTAGTTTCAAAGGGAAGTTCCCTTTGTGTTTGTCTGGAGATGAGAGAGAGTTGCGTGTTTCTGACTTCTCTAAATTCTAGCATACATATAACCACTATCCCTTTTGCATTATTGGTCTGCTGTCCTAAGTGAGGTGGTtcttgcctttttgtttttttgaagcctttttgttttgaagcctTTTGGGGTTTTTGGCTAGTGTGCCTGgtgctttttgttatttttgtaaggaTGTGAGTCTTGGATTGCCTTTTTGAACTTTGCAtcaatttttgttcctgttggagtatttgggaaatatttttgttctttcttggTTGGATTACAAAGACATTCCTGGACCGGTCCTGGATCTTCGGCCTAGCTCAAGGAGTGGTAAGACCAGCCAGTGGCTGAgaactttatttttcaggacTTCCTTTTTGAACAAATTGTgcaagtgcaagaatacagtatTGATTGCAatgatggtactgcatgatggataagtatctgcctgtacttctcagcattgaggagaccattcattctgaccaaatcccaactccatttgcagaaatgcagccccaaacttgcaaggaacctccaccatgcttcactgttgcctgcggacactcattcgtgtaccgctctccagcccttccgCGAACagactgccttctgctacagccagatatttcacattttgactcatcagtccagagcacctgctgccatttttctgcacctcagttcctgtgttttcgtgcatagttgagtcacttggccttgttgccatgttggaggtatggctttttggccgcaagtcttccatgaaggccacttctgaccagacttctctggacagtagacgagtgtaccagggtcccactgttttctgccaattctgagctggacatcttccgattgcaaagggaagtaagcatgatgtgtctttcatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89693 lncRNA downstream 435984 25590818 ~ 25591551 (-) True G71740
TU89674 lncRNA downstream 494355 25530938 ~ 25533180 (-) True G71727
TU89673 lncRNA downstream 518665 25508597 ~ 25508870 (-) True G71726
TU89670 lncRNA downstream 536884 25488226 ~ 25490651 (-) True G71723
TU89502 lncRNA downstream 1871387 24155730 ~ 24156148 (-) True G71593
TU89847 lncRNA upstream 192694 26221194 ~ 26221397 (-) True G71871
TU89849 lncRNA upstream 206911 26235411 ~ 26235615 (-) True G71873
TU89850 lncRNA upstream 215044 26243544 ~ 26243813 (-) True G71874
TU89851 lncRNA upstream 237231 26265731 ~ 26266216 (-) True G71875
TU89852 lncRNA upstream 239367 26267867 ~ 26268407 (-) True G71876
AMCG00014663 mRNA downstream 125841 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014658 mRNA downstream 175564 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014659 mRNA downstream 263616 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014656 mRNA downstream 297903 25709634 ~ 25729632 (-) True AMCG00014656
AMCG00014650 mRNA downstream 628701 25397830 ~ 25398834 (-) True AMCG00014650
AMCG00014666 mRNA upstream 125564 26154064 ~ 26160288 (-) True AMCG00014666
AMCG00014675 mRNA upstream 307675 26336175 ~ 26336979 (-) True AMCG00014675
AMCG00014671 mRNA upstream 318000 26346500 ~ 26360991 (-) True AMCG00014671
AMCG00014673 mRNA upstream 375582 26404082 ~ 26428529 (-) True AMCG00014673
AMCG00014674 mRNA upstream 400181 26428681 ~ 26480278 (-) True AMCG00014674
TU87063 other downstream 14365042 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 15229388 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 16710368 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17643311 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 17868945 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 2301239 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3360790 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 6234667 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 6568962 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 6568962 32597462 ~ 32619149 (-) False G73127

Expression Profile