RNA id: TU89851


Basic Information

Item Value
RNA id TU89851
length 486
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G71875
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26265731 ~ 26266216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAAAGCCATCCGGGTATACTTCAGGCAGGAATTTAGTGCTGATATCACCTTTCACAAAGAGGGGGTGAGTAATAATCTCCCGGAGTAGAGGAATGTTGTGTGTGACTCCTGGAAAATAATAGACAGTGAGAATGACAGTCgccaaaaacagcaaaaaacgCAACTCGCAGTCTATTCCCAAAACAAATGATATCAGAGTAATCTTTTTTTAGTAAGGACATATCTTTAAtgaaagggagaaaaacaatTCTGTTACAGTTAGATTCACCCACAGTTTGCACCACATACACCATAGAGTTCAACATTTCACTGTTGTCTACGAAACCAACATACACAGTGGTACACTAATAATTTAACCAACAGTGAATAGACCCATTCAGTTCATCACTCTTAAAGAAGTAAAAAGAAGTAACTTTTCTGATGCAGTATGAGCCCGTTCCTGATATGGCATCACCTCACTTGAGGCCAATAGGAGGAGAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89850 lncRNA downstream 21918 26243544 ~ 26243813 (-) True G71874
TU89849 lncRNA downstream 30116 26235411 ~ 26235615 (-) True G71873
TU89847 lncRNA downstream 44334 26221194 ~ 26221397 (-) True G71871
TU89807 lncRNA downstream 237231 26027535 ~ 26028500 (-) True G71835
TU89693 lncRNA downstream 674180 25590818 ~ 25591551 (-) True G71740
TU89852 lncRNA upstream 1651 26267867 ~ 26268407 (-) True G71876
TU89855 lncRNA upstream 15158 26281374 ~ 26281965 (-) True G71879
TU89856 lncRNA upstream 57822 26324038 ~ 26324254 (-) True G71880
TU89858 lncRNA upstream 68439 26334655 ~ 26335000 (-) True G71882
TU89953 lncRNA upstream 666052 26932268 ~ 26932637 (-) True G71961
AMCG00014666 mRNA downstream 105443 26154064 ~ 26160288 (-) True AMCG00014666
AMCG00014662 mRNA downstream 229904 25901904 ~ 26035827 (-) True AMCG00014662
AMCG00014663 mRNA downstream 364037 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014658 mRNA downstream 413760 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014659 mRNA downstream 501812 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014675 mRNA upstream 69959 26336175 ~ 26336979 (-) True AMCG00014675
AMCG00014671 mRNA upstream 80284 26346500 ~ 26360991 (-) True AMCG00014671
AMCG00014673 mRNA upstream 137866 26404082 ~ 26428529 (-) True AMCG00014673
AMCG00014674 mRNA upstream 162465 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014672 mRNA upstream 255880 26522096 ~ 26539562 (-) True AMCG00014672
TU87063 other downstream 14603238 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 15467584 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 16948564 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17881507 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18107141 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 2063523 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3123074 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5996951 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 6331246 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 6331246 32597462 ~ 32619149 (-) False G73127

Expression Profile