RNA id: TU89956



Basic Information


Item Value
RNA id TU89956
length 938
lncRNA type intronic
GC content 0.33
exon number 2
gene id G71963
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26952296 ~ 26953253 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctggtctcgttttaaaatgtattgatttgaatggaaacctgcttcggttaaattgatatcgttttaatgcaaaatgcggacaattaataaagttatggtcccgttcacaatttcacaatgcaatttccacgtgtagTTTGAACTATTTACATCATtttaactcattacttagcatAGACCTTTATGTGAACCAGCGAAATGTATCATAGatctatagatcgatatgacattcaagcAATACAGAGTCAATACTGTCTGTGTCGGTGCACGCGTTTACTCTGAGTTTACTCTgagtttactctgtgtttactctgttaattctgtgtttactctgagtttactctgtgtttactctgttaattctgtgtttactctgagtttactctgtgtttactctgttaATTCTGCGTCTGACGCGCATCtatgggggcggggcttgagttacATCACACGCTGACGCTCTCCACAGGCCAGGGCGGTATTATGAACATAGTATTATGCTGACCAAgtactttttatattattattattattattattattattattattattattattatgtacagtttttttaattatcttcaGCACATATTAACCACTTACCATCAGCAACCATAAGGTCCAGACCCTTTAGGGTTATATGCTTCTTGGACTCAGTATtagataatatttttttttcacagagcTACTGTCTAGTGGTTTTAACAGgtgaaaattaatgtttatacaagtgtttatttttgttttcaatacaaactTATGTattatgtgaaaatgtgtttgtttttttccgtTTCTACATTTTGTTCAATGCAAAGGTTGCATTAGTGCTTTTGTAAGAATAGCACCTTGAATGTGAGGTGAAAAAGCGTACACTCTCTATTTTTGcccaaagttgttttttttaaaataaacttttcatcAAATGTGCATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89946 lncRNA upstream 41059 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 720731 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 941296 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 992594 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 1181807 25770209 ~ 25770489 (+) True G71784
TU89992 lncRNA downstream 73522 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 521811 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1287313 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 1344416 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 1384038 28337291 ~ 28341717 (+) True G72208
AMCG00014687 mRNA upstream 42922 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014684 mRNA upstream 51482 26890732 ~ 26900814 (+) True AMCG00014684
AMCG00014680 mRNA upstream 62166 26886487 ~ 26890130 (+) True AMCG00014680
AMCG00014682 mRNA upstream 70500 26869226 ~ 26881796 (+) True AMCG00014682
AMCG00014681 mRNA upstream 86056 26859733 ~ 26866240 (+) True AMCG00014681
AMCG00014683 mRNA downstream 13492 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014690 mRNA downstream 24182 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014691 mRNA downstream 368361 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014701 mRNA downstream 529835 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014705 mRNA downstream 749831 27703084 ~ 27714268 (+) True AMCG00014705
TU89430 other upstream 4096650 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8677936 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9503843 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10483183 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10819494 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 882250 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 915450 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1349120 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2898197 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3811098 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile