RNA id: TU90212


Basic Information

Item Value
RNA id TU90212
length 2980
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G72173
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28297669 ~ 28300813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaccaccaccaaatcCTCGGTTTCCTCCATGGCCACCAGCGCTGCGACCGCCACGGCTGCcaaagctgctgctgctgccactgtTGGTCTGACGGTAATCCCTGGCACCAAACCCTCCGGAGAACCTTGGAACGGCCACGGGTGGTCGTCTTGTGCTGCTGTTCATAGGCTAGGTTCTCCAGCCAAGATGGAACCTCCTGTTTGGCTTCAACCAAAATGTCAAGGAGGTCCTTGgttatgttgctgtttttctcatTGAAGAATGATGTAGCCAGACCTTGAATggaacaggaaaaaataaaaataatggttggaaataaaattatgcattttgcTTAGTCATCTGACATGGAATTTAGGGTTCAGTAGTTCACCAAGTAGTGCACACCACTGAGAGTGTTCCAGTCCTGAGATTCATCTTTCAGAATTGGACTgacctcacccccccccccccccccccccccccccccccacaccaagGGGCCTATAAAACTGTAGGGGACTCACCAAGGTTTCCGACACGGCCAGTACGACCAATACGGTGGACATACTCCTCAATATCGCTTGGCAGGTCAAAGTTGATGACATGTTTCACATTGGAGATGTCCAATCCACGAGCAGCCACCTGCAAGACTGAAAGTTAGCTTTCTGATCtagaggaggagagggaagtAGAGAGGGAGACCAACTAAATTCACTTACAGCTGTGGCAACCAAGATGGGGCAGCGGCCTGAGCGGAACTGATGAAGCGCCTCCTCTCGGTCTCTCTGTGAGCGGTCTCCATGGATGCTGGTGCAGGCATACCCTTCACGGTACAGGAAGTCCTCCAGGGCATCCGCACCCTTCTTGGTTTCCACAAACACCAGGGTCAAAGAATCTTTGCCTACAAACAGAGGGGCTCAGTGATGAGTGTGTGGTTTCTCCTTCACACATTGAACAGAACAGCCTCACATGCCCAGGTGGGAGAAGCAGGAGGTGGGGTGGAGGGGTTCAGAAGCAACATTTCACCAACCTCAATAAGCTTAGATTTTATAGGAATTGCACAAGTGCGTATTGAGACCTgagaattataaaaaaaaaactgggagCTAGATGTACAATAAGTAAACAAAAGGCCGTTTTGCATTAACTGACAACCATTAAGTAAAATTTGTACATTGTGCAAAATGGTCCATACCAAACTATAAAAACTTGGCACATCTTCAGACAAAAGTCAATAAGACTCAAGTTTAAACTTGTCCTCCCCAAGAACCAAGGAACATCTACTTTACTATTGTTAGTGGGGTTCAATGTTTGTCACAGGgtaaatttaattttctttaatggCTATCACAGCAAAAACTTGGGTATAAAGAGGTTGGTGGTGGGTGAGGATTGAGGAAGACAGGCAGTTCATATCCACATGAAGTGACTTGTCCCATAGGAAGAAAGTGCATGTGAAAAAGTCCCACTTACTTTCAACAGCAAAATAGTACAGTGAGGATTTAACTATACAccaaaaaatggaaaatacaagaACACCCCGATATGGTGGATCGGCGATTGACAATACTGAATTTGTAATTTAGCAAAGTGGCAAAAAGCCACTGTAAGTTTACACTGTAGTTGATATCTGAAGAAGTCACTTCACAGGCAAGTTGAAACTAAAATGACTAAGACAGTAACGCTGAGTCAATTTATTCATGCATGTTTTGATAaccttacatttaattacagtagAAAACACAGATCTATTAACAATGAATAAAGGCAGTGTTTGGATAAGTTTCTACATGGTGTATGTGGAGGTGGACACAGGGCAGGAATTCTAAAATCTGTAGCAATTTTGGAGCCGCATTCTTGAATAGAGGACTCAAACTGCAACACGTTACTGTCCAACTAATCAAAAGCAATGAAGAGTGCAGTATGTCAAACACTTTACTAAAATAATGGAATAagctccaaaaacaaaaaaatgaaatgagacAGGCATTCTACTACCACTTCATAATTACAACAGATTTCCTACTCACCAGGTTTTTCGGAGCTTTCACTTGCGTTTTCCTGAACCTCACTCGGAATTACTTTGAATAAAACCAAATCTCGCGATAAACTTTAAGCATTCAGAACTAAACAGTCAATTACATGCATTTAATAGACCTAGAACTAGCAGGATGTCTTAACACTGTGCCTATTAAACTTTaagagggagggggaagaaGGGGACAGAAGCCATTAAAGTAGTAACTCCAGAGGATAAATCTGTGCCTGTGTTTGTATGCGGTCACGCTCTTTGCTGGACAAAGACTATTCTTGCAAATTCCACTTTTAGGACACTGGGGAGGGAGGCATTTGTAAActataggaaaaacaaaaacttatttCCGTAACAAACATTGAACCACAGTCAGTATATGGATATATCCTAGTTAGTGGCAACGCTCAAATCTACCTTATATTTAAGCACATCTAAAAGATTACATAACACTGCAAGGTCCACAAGTTATAGTATTGTTGGgtttccattattttcagatatacAAAGTGTATTTACCTGTAGCATTAAGGAGATCAAGCAGGAAGGACCGTTTGTCGCTTTCCTCTACCCAAACCACCTTTTGGGTGATGTTTTCAGATGTGGAGCCAACACGACCAACAGCCAAGAAGATGTACTCCTCCAGGAAGTCACGGGCAAGGATCtgaaaagacaattaaaattttagtttgtttttcttgaaagaATTGCTTAAAAACCACAGgtattagaataaaaaaaaaaaaaaaaaaaaaaaagttacctgGATTTCCTTAGGGAAGGTAGCACTGAACATCATGGTATGACGCAGTCCTTTTGGAGGCATGGTGTCCTGCTCCACAATACGGCGAATCTGAGGCTCAAACCCCATGTCAAGCATTCTGTCAGCCTCATCCAACACCAAGTAGCTAAAAGGACAAGTTCAAAAATTAGTTTGATGGGAATTGTGCAATTTCCCCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90207 lncRNA upstream 185 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 818225 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 1270397 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 1344416 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 1386432 26904877 ~ 26911237 (+) True AMCG00014687
TU90255 lncRNA downstream 36478 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 225975 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 530943 28831756 ~ 28831975 (+) True G72329
TU90400 lncRNA downstream 535469 28836282 ~ 28837910 (+) False AMCG00014729
TU90416 lncRNA downstream 618163 28918976 ~ 28921290 (+) True G72341
AMCG00014710 mRNA upstream 16945 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014709 mRNA upstream 61754 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014711 mRNA upstream 113139 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014708 mRNA upstream 378746 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014703 mRNA upstream 417914 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014714 mRNA downstream 28984 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014721 mRNA downstream 106404 28407217 ~ 28441529 (+) True AMCG00014721
AMCG00014722 mRNA downstream 144163 28444976 ~ 28450107 (+) True AMCG00014722
AMCG00014720 mRNA downstream 155382 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014724 mRNA downstream 282656 28583469 ~ 28590960 (+) True AMCG00014724
TU90175 other upstream 417869 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 455798 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5442023 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10023309 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10849216 17403511 ~ 17448453 (+) False AMCG00014553
TU90214 other downstream 1560 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 1550637 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2463538 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2677403 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2678757 30979570 ~ 30980252 (+) True G72786

Expression Profile