RNA id: TU90255


Basic Information

Item Value
RNA id TU90255
length 2113
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G72208
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28337291 ~ 28341717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACACTGATCCAAAGTCAAAAAAGATGCCTAACAGAAGCCACAATATTGAGGGCAACAAGTCTGATTTCAATGATAAAATCTGGAAACCCTGTACATCTTATCAAACCTCATCTTTACCAAATAGCTGATAACACCAgagtatgaaaagaaaaaggagccCAAAATGTATTTCGGTCTTTCCTCAAGTAAAATTTCCAAAATTCCATGTCTTTATAATGGCTCAGGACACCTACAATTTGCAtgctattttaaagaaagatgtaagacaaagcaattcaaaagaACAATCTTTAATTACCTCTTTCAACGCATTCTTCAAAAATGTGGATGGAGTTAACAACAAAAGGTAGGGAGCTTGCGGTTATTACAAAAACTTAAAAGGTcaaccttaaaaaataaaaattaaaaatcacttttttgcGTCAGTACTGGTATACAGACTAGTAatgttcaaaattattatttttttgcaacaaGGAAATGAGCACATCTTTCATTGTCGAAGTATCGCATCCACTTAAGCGGAGCACATAGGTACCCAACCAGGTCTGACGTGAGCAAGCTGCTGATCTAGTCCAATAACAATCTCATGCATTAACTCAAGAACCTCCCTCCTGTATTGAAAAATCCTTCAGGGCGCCAAGAACCGGATACTTCCATTGCTGCCACAAGGGGCCATGGGGAAGAGGCTGGGGGAGAAGAGTGGAGGAGCACATACTGCAAGTCATtcaaatactatttatttttctttctgaagtAGAACTTTACAGTGTGCTGGGTTTTTATTACAGTGCTCTAAGGCAGATCAAGGGATATCATCCATGCATGTTTCACAAAAGCtttagaataataattaaaaggaaaaaaaaaaagtcagaaggCAACCATCTGATTGGAgcaacacattaaattaaaaaagaaaagaaaaaaaaagataaggcCTTACAGGCTAAAAACCATGAACATTTTTGTGTCCCCTGAAGGAAACATGTGAACGTAAAAATCACCTGTAGTGTATTTTGTCTCACAACTTGGGGCTGGGaaagtggggtgggggtgggaccAAGTCTTTTATACAAAGCAGTAAAATCAGCTGCTGCACACTCTTTTGGTTCTTTAACTTGATGcagtccctccctctctggGGGGGCAGGGCTTTCCTTCTACTGGGACTGAAAGCTGGGGGGGTGAACTCTTCAGGCTTCCACAGCAGAGCAGAAAGTGATGCATCTCCATAAGCCACTTGTTTGGTTTTGGCAGACTTTTCAGGCTAACCCTTTCAAATCCATGCAATGTATAAATGGCATCCTCTGCTCTTTTCGGCAGGTCCCTCCTCTTATGGATTTGTTGCTCCCGTTCTTTGATAATCCATTAATGAAatgttgctattgtttttttttgttgtttcttttcttttcttacgTGCACGAAGTATTTACAATGTACCATAAATAAAGTATGAGACAGTTACAGTGTCGAtattccattttctttattcttgCTAAGGGGcgcaatgcttttttttttttttttttttttttttttttttttttttttttttttccattttgttgtttttttcagagaTCTGCAAGTCTCCTACAGCAACAGACAGCCTTGCTGAGGAGCTTAAACAGTCCAACATAAACATACTATATACACCTTTGCCATTTACACATTAGCGTCAGGCCTCTTTATTACAACACTATACACTTTCCACTGCAGGCGGGTTATATTTTGACAGCAATACTCTGCAGGGCAGACAGTGAATAGACTCTCCACTCcaggtaaaatacaaatagtttAATTGTGAACGTGAAGGACCTGGAGAATAGATGAACTGTAAGGCCTGGTCGTGCACTTGTACCAAGTGTCTTGATGGAGAGAATCGGATGAGAATCAGAGGAGAATCTGCCGTTTTTATTCTTTCGTCTGAGACGGAGGAGCCTCTTCACTGCTTTCCCAGTTTTCTTGTGCTCGTTGGCCTGTACGCTGAGGGTTGTTCATATGCTGTGCTGCTGGGCCTGTATATGGCTGACCATGCGTGTGATTATTCTGGAAAACAAGATGAGTGGGCTATTAggttgtattttataataataaaataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90212 lncRNA upstream 36478 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 39807 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 857847 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 1310019 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 1384038 26952296 ~ 26953253 (+) True G71963
TU90338 lncRNA downstream 185071 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 490039 28831756 ~ 28831975 (+) True G72329
TU90400 lncRNA downstream 494565 28836282 ~ 28837910 (+) False AMCG00014729
TU90416 lncRNA downstream 577259 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 639405 28981122 ~ 28985576 (+) True G72353
AMCG00014714 mRNA upstream 4823 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014710 mRNA upstream 56567 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014709 mRNA upstream 101376 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014711 mRNA upstream 152761 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014708 mRNA upstream 418368 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014721 mRNA downstream 65500 28407217 ~ 28441529 (+) True AMCG00014721
AMCG00014722 mRNA downstream 103259 28444976 ~ 28450107 (+) True AMCG00014722
AMCG00014720 mRNA downstream 114478 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014724 mRNA downstream 241752 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014723 mRNA downstream 249361 28591078 ~ 28609187 (+) True AMCG00014723
TU90214 other upstream 33218 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 457491 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 495420 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5481645 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10062931 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1509733 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2422634 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2636499 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2637853 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2648346 30990063 ~ 30996363 (+) True G72787

Expression Profile