RNA id: TU90285


Basic Information

Item Value
RNA id TU90285
length 2377
RNA type TUCP
GC content 0.47
exon number 2
gene id G72236
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28329739 ~ 28332482 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACATtcaaaaagttgtttttttttggaacACGTTTTATTATGAAGAGACACTGTAGTTTAGTTTTCCTTCTCCTGGACGGTCTTTGTTCCACGCAGTCTGCCAGTACGACGGGCAGCGATGAGACCGACCTTACGACCAGCTGGGGCGTCCCTCCTGATAGTGGAGGGCTTGCCAATATGCTGATGGTTACCACCACCGAAGGGATGCTCAACAGGCTGGggaacaaagagagagagaggaagtatCCCATGAACACTCACTGTCCATCTCCCATTACAGCTGCACCGGACACTGTTGAAACTCACTGCTTAACACTTTATACAGAGAAAAAGTCTTTCATACTTGAGCTACTGCTGCCATTACCTTGATGTTAACTGATGTATAGAAAAAAAACTGATCTGTTGCATGAAACTTCAGATAAATCCTTAAACTACATCACATCGCAGTATTGTGTTTAAAGGTAGCATTGTAAGCAACGTGCCACAATCGCTCCAGAACACGTGGAGCAGGAAGTCCAGCTGCAGGAGCACACTTACGTTCATGGCCACACCACGGACACGGGGCCAGCAGTTTCTCTTGGCCTTGTACTTGTGGTAGGCACGACCCGCCTTCAGGATGGGCTTGTCAATACGACCACCACCAGCAACGAgacGACAACGGCTCTGTTGGCAGAAGAGATGACTTTCTTGGAGCCGGAGGGCAGCTTCACTCTGGATTTCTTGGTTTCTGGGTTGTGGGAGATGACTGTGGCGTAGTTCCCGGAGGCACGAGCCAGCTTGCCACGGTCACCAGGTTTCTCCTCCAGGCAGCACACAATGGTACCCTCGGGCATGGTGCCCACTGGCAGCACATTGCCAATGTTCAGCTGAGCTGCAAGGGACGGAATAACagcatattattttcaatagaaACCACCCAGATAACTGCACATCCTGGAATTAATGCGAAGATACTACATCCCTCAGGACAGACCAGCCTTAATTACATTCTAAGTAGCCAGTGGGAGCAGACCGTCTGTTACCctttagttttcattcagccACCTGCAGAATTCCTCACAAACATCTTCAGCAGGCCAAAAGATTCATGAACACCTACCCCCACCAATCTTTCCCCATGCTCCACCACGGTGTGATCCCCATTCAAATGAGACCCCGTGGACTCACCCTTCTTGCCACAGTAGATGAACTGTCCGGTGTGGATGCCCTCCGCTGCGATGAAGAGTTCAGTCCTCTTCTTGAATCTGTAGGGGTCCCTGAAGGCCACCTTGGCCAGGGGGGCTCCACGGCCAGGATCGTGAATGATATCCTGGGGGAAAGAAGGTGGGAGTCAGACAAACCGACCAGCATCCCAAAGCACCTACAGCCGGGCACTGCCCTTCCAGACGGACCAAGACCTCTCACCTTCACGATCCCCTTGATGTAGCCATGGCGCTCAGCGAAGTCAATAGATCTGAGCTTGGCAGCCCCCTTCCTGTGCTTGACGTGGGCCTTGAAGACGGAGCCCGCACCTTTTCTCTGTCCTCTGATGACACGTCCCATTGTGCACTGAAGGAGCAGACAGAAAAAGAGCGAGTTTATACAGGATCAAAATAACTAAGTTGTATTGAACTCGAGTAAGGACATGCAAATCCTATAGGAATCCCAATCATTACTTGCCCCCTTTAAcgagaaaataactaaaatattacTTTGATCTTTGTAAAATGGGTTTATATtcgtaaaaataaaatgtgttacagGTTTAGAAACTTCTTCCACATGCACGCATTGCTGGGCCTCATCTCAACTGCACTCATACATGAAACACTACTCTCAGCAGTGCAAATCTATTTAGTTTATGCTATAATGCTACATTCACGGAGCATATAAAGACGTGGAAATGTTGCTCTAAATCATTGCGACGACACGTAATTGCACGTTAAGTGGGAACCAGAACTACGGCTGCCTCATACCGAGGACACACCGAACGCGATACACACGTTAACGAAAGCTACAATAACACAACGAATAGTTACGATAATATATTTAAGGGCAAAGCCAATAAATGAAAGCAGTTCCgtttaaaatgaataacctAAACACGTAGCTATATGCAACCGTGACAGACCCCACTGCTGGTCCTTATGACACACTCAACAATcgcttattttattaaaatcctTCTTCCTAAACACTCATGGAAGTATATACGGAACATACAGTtgttactttatatatacaaagGGCAAATCTGGATGGATGGGATAATAAATACAGAGATTAAAGTCGGATTTAACATGAGATAAATATCCGCCATTCCCCTACCTAAACCCGGCTGTCGAAAAAGAGGAAGTCAGGGGCGCAGACCAGCATTTTCTTCCGGAGGATTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90174 lncRNA downstream 468364 27856739 ~ 27861375 (-) True G72146
TU90167 lncRNA downstream 491812 27836339 ~ 27837927 (-) True G72139
TU90102 lncRNA downstream 799096 27530296 ~ 27530643 (-) True G72089
TU90058 lncRNA downstream 910694 27418816 ~ 27419045 (-) True G72049
TU90042 lncRNA downstream 986989 27335695 ~ 27342750 (-) False AMCG00014692
TU90346 lncRNA upstream 245927 28578409 ~ 28578734 (-) True G72280
TU90377 lncRNA upstream 314013 28646495 ~ 28646811 (-) True G72305
TU90378 lncRNA upstream 323084 28655566 ~ 28655765 (-) True G72306
TU90379 lncRNA upstream 325595 28658077 ~ 28658299 (-) True G72307
TU90391 lncRNA upstream 341899 28674381 ~ 28766089 (-) False G72317
AMCG00014715 mRNA downstream 14341 28289355 ~ 28315398 (-) True AMCG00014715
AMCG00014713 mRNA downstream 109253 28219392 ~ 28220486 (-) True AMCG00014713
AMCG00014712 mRNA downstream 124778 28061628 ~ 28204961 (-) True AMCG00014712
AMCG00014707 mRNA downstream 567326 27717966 ~ 27762413 (-) True AMCG00014707
AMCG00014702 mRNA downstream 820597 27492028 ~ 27509142 (-) True AMCG00014702
AMCG00014716 mRNA upstream 8669 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014717 mRNA upstream 155147 28487629 ~ 28490563 (-) True AMCG00014717
AMCG00014719 mRNA upstream 161624 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014718 mRNA upstream 162025 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014730 mRNA upstream 597883 28930365 ~ 28951352 (-) True AMCG00014730
TU87063 other downstream 16667246 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 17531592 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19012572 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 19945515 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 20171149 8156229 ~ 8158590 (-) True AMCG00014298
TU90581 other upstream 1056808 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3930685 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 4264980 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 4264980 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 4469376 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile