RNA id: TU90392


Basic Information

Item Value
RNA id TU90392
length 3509
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G72317
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28674381 ~ 28766089 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGggttttgtagatttttttattggcaTGTATACCCCAGATACCTGTAAGACAcagtaggaatacaaaaaagtGAGTAAACAAACTAGTGATAACCTTTACAAGAatacaaaatggtttaaatgctggtcacatgacaaaaacaatcaaacaaacaaatcaaagtcAAGTTCAACTAGTACAAGGTAATACTGCCAAATATATCTGTGCTGTTTTCAATCCGAAGTTGTATTCAAACGCTAGATGGACCAACATCCATCGTGCATGTAGCTGTAGATGTAGATGTTGTATTTTAAGGTGTTTTTCAGTCATGAACTTTAAAACAGcctttgatttttctttattcttttaagGCACTGATACTGCACATGGTATACACAATGCATTAGTAGAATCATCCAACGTAAAGTTTAACAACGTAAAATATCTATGCTATAGAGTTGATACTGATTCTAATCCActgatatatattgaaataaaaggtattttgtAGTTGCTGGGTCCAGAGTAATGCATTACCCGGAGGAGTTACACAACATCAATCAGCTTCTCATGGCAGGCTTTGGTTTCAATGTCTCAACTCTTTTTCCATTCCTACACTGGTTCAGCTCTTTGGTGCCCATCTCTTGACCCCCCAAGACAGACAATTCAGTACTTGCAAACTCACAGGAAATATCCCCAAACTCACACTTGGATTCTCTCTGTCCGTTTCCCTTTTCTTTACCcacattctttcttttctgtcatACTCGGGAAGCAACATACAGCAGATGAAGGGTTTTAAAAAGCAGGTACCGAAAACCATTCATTTGTGTAGTATGTGATCCCAATACACTGACATCTGTGTGATGTGACAAATGACTAAACAGCCTTGACTGAACACAAAGAATGACGCAAAAGCTGACAAAAAGTAATGGTAGCTATGAGCCTAAATCAATCAACACCTTGTAACACTGTATGTGGATAAAACAAGTGGAAAGTGtttgaaatacaaagcaatacaGCCAGACAACCCTAGCAGGTAGGTTCATAAAGCATAACTGTGGCAGTTTTCATTCTTTGTAACTATGCCCCCTTTTGTGGTGTAAAACAGTAGGCATTTGTACTGTACTTGCTTAAGATTGCCATCTGAGTTACaatccaatttaaataaaatacgaAGACTactacaaaattataaaaataaatgcaaaaatactatcaaagtgtaagaaaaaaagaaatcgCACCTTCGTGAAACATGTGCCATTGTAAGTGACAGGGAAGAACTGCGAATAACTCTGCATGAACTATATAACCGACAGAGCAATGGATGTCAGCGTAGGTTTTAGTAGTACTTGAACTTGCATCTGTCATGGGAGTCAGCCAGAGCATAACCACCGGCCCTGAAGATGTGTGAACAGAGACGTTTTAGATCTCTCCCAATCTGTCAATGCTTCAATCTAATCCTACAGATCTGCTCCCTGAAGGCAACAAACCCAGGCAGAACGTGTCTGCTTGCTTCTCCATACATTTTCTCTGCAAATGCTTAATATTTGGTTTTGCTGCGTCTTCCATCCTGCCAAGTCCACGTCAACCTAATGTCTTTAGTCTTCAATTGACATACAGTGTATTTAGACATGGTAACTGGTACAGTACTGGCTAATTTACAGTATTGAGCATTTAAGCCtaagcattttaatacaatttcctTTTATATGTAGATACACAATTTTAGATTATTCTAGATTctacattattttgattaattttgctGGTTAGGATACATCTGAATAAGGAATGTAAAGTAGGTGGTTACTCAGTTGACTGTGTCCGCAATTCAGATCACCTTGATTTTATCGGCTACCAGGtcattcttttaaaaagtatatttatgcCTCTAGCCTAACAACAGACCTGTTCTTGACGTGCACGATTGACTGATTTATGGGAagttataatgtttaaaactaaattctTTGACAGAAATTATATTAGCTTTCTTCTAATATGTAGGAGACTGTTGCTTTTCATGGCAAACATACTGTATAAGTCACTATACACAACATGCGCTATTACTTAGTAGGAAATGTATGGTGCAGTAGAAAATCGGTATCCGATCATGCAAAGCAGCAGGAAACTAAGATGGCATTCCTAATTGTGCGATGGTCCTCCATCTCCCCACCTCACTTGTAGTGTTTAAATTTAcggcagtttaaaaaaacaacaacaacaaacaactgtCATCTGGTCGATGGATCTCACACCTCAGCACCAAGTGATTCCATCAAAAAGAATACAACACTTTACACAGAACACAAGTTGTGGATTATTACCCCATTGATAACGAAtgaaaaaaacgaacaaaccaacataatacaataataatgataaaaaaaaaaaaaaaaagtactagGTAATTCTTTTAGCAACAGTACGAGATTCAAGCGCCGGCCTGCACTTCTTGAGGAAAGGAAGGTATGATTGgagttttttcattttactttttcttcttcctttgcAAGCCTTCTTATATGTCCTTTGTAGTTGCTTTCTTGGTCTTCTCCACGGTTTCCTGGTGTTTGTTGAGCTCTGACACATGCCTGGTCCATTCCTCCTCGGTCATCTCGTCCTGCTCATCGTCCACCACGGGGGCGGCCTGCTTATCTTTACCACTGCACGTCATGGCAGTGCACACCCAGTTTCCACAGGCGCACACACAGCTGTTACACTCCACCTGTGTCTCCGCGCCATCGTCATAGGTCTCGTCCTCAAGGGCACACTCTGTGGAAGCAGATGGGTCAGTCATGCTGGGAGATACAGAACACCGACATCACTAACTGCTCCCCTGAAGAGTGACTCACACCTTCATAGCTTATTGTCCTATTGATTCCTCTCTAAGAAGGAATGAGTCATGATAAAAACACCTTTTGGACGAAAAAGACATATCTGACTTTGCTGCTCTGTAGAGGTATGATTATCTCTCACCAGGGAACGTGTTCTAACAACAGTCAACGTTAAGCATAGACTAGAACTTAAAAGCTGCATGCTCAGCCAAAGTTCTTTGTATTGACTTCTTATATTTGTCAGTCTAACCACAGGGGTCCAAACATTGGCATAGTCTCCTGATATGTACAGTCCTTGCAGGGAATGCTTGATTTTGACCCAGTTTGAGAAAGAAGACCATCTTAGTCAAGGACCAGTTGCTTAAAGCACATTAAGATGctgttatttgcatttaaatgggtTGCACAAAGTACTCTAAAAGTCAATATGCTAGTTAAGAGAAAAGATGGTGAATTTGATACTTTGCTATTTTTTACATAACTGGACTGTCTGTTTTTTGGAGTCTGTCCGTAACAATAATATTATCCAAAGGAGAGActgtattaagaaaaaaagacaaaggacAAACAGAAAGTCTTTTAAACCTACTCAACATTTGTAGGCAAAAAAAtgacaaagtaaaaacatttaatttcaacagCTGTGCTTCAGATTCCAAGAAGTAATAAACCGTATATCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90379 lncRNA downstream 103657 28658077 ~ 28658299 (-) True G72307
TU90378 lncRNA downstream 106191 28655566 ~ 28655765 (-) True G72306
TU90377 lncRNA downstream 115145 28646495 ~ 28646811 (-) True G72305
TU90346 lncRNA downstream 183222 28578409 ~ 28578734 (-) True G72280
TU90174 lncRNA downstream 900581 27856739 ~ 27861375 (-) True G72146
TU90393 lncRNA upstream 1511 28767600 ~ 28768329 (-) True G72318
TU90398 lncRNA upstream 9192 28775281 ~ 28775737 (-) True G72323
TU90399 lncRNA upstream 10138 28776227 ~ 28779293 (-) True G72324
TU90409 lncRNA upstream 54731 28820820 ~ 28821076 (-) True G72334
TU90446 lncRNA upstream 159541 28925630 ~ 28994350 (-) True G72370
AMCG00014718 mRNA downstream 266930 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 267470 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014717 mRNA downstream 271393 28487629 ~ 28490563 (-) True AMCG00014717
AMCG00014716 mRNA downstream 381903 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014715 mRNA downstream 446558 28289355 ~ 28315398 (-) True AMCG00014715
AMCG00014730 mRNA upstream 164276 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014731 mRNA upstream 229847 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014732 mRNA upstream 257689 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014735 mRNA upstream 585659 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014742 mRNA upstream 687953 29454042 ~ 29463876 (-) True AMCG00014742
TU90285 other downstream 429474 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17099463 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 17963809 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19444789 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20377732 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 623201 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3497078 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3831373 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3831373 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 4035769 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile