RNA id: TU90404


Basic Information

Item Value
RNA id TU90404
length 220
lncRNA type intronic
GC content 0.42
exon number 1
gene id G72329
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28831756 ~ 28831975 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggatcaaatacttttttccctcactgtatagtatGGGTAGAATGCGGTTCTGAATACAGCCCTACTCCTTCTCCGGGCAAGACATGCCCACACACGATTCAAAATGCTGGCATTGGTCGttggagtaactgtcaatcatgttttatgcagccaatcacttttcaggaCATTATTGTCAATCTTTTATTTAACACAACCAGTTACTTGCAGAAGACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90338 lncRNA upstream 253023 28526788 ~ 28578733 (+) True G72273
TU90255 lncRNA upstream 490039 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 530943 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 534272 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 1352312 27475064 ~ 27479444 (+) True G72072
TU90400 lncRNA downstream 4307 28836282 ~ 28837910 (+) False AMCG00014729
TU90416 lncRNA downstream 87001 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 149147 28981122 ~ 28985576 (+) True G72353
TU90429 lncRNA downstream 157632 28989607 ~ 28991299 (+) True G72354
TU90496 lncRNA downstream 305154 29137129 ~ 29137353 (+) True G72409
AMCG00014725 mRNA upstream 52466 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014726 mRNA upstream 65666 28695811 ~ 28766090 (+) True AMCG00014726
AMCG00014723 mRNA upstream 222569 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014724 mRNA upstream 240796 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014720 mRNA upstream 347906 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014727 mRNA downstream 49942 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014728 mRNA downstream 73926 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014734 mRNA downstream 264154 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014733 mRNA downstream 288976 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014739 mRNA downstream 415900 29247875 ~ 29256354 (+) False AMCG00014739
TU90214 other upstream 527683 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 951956 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 989885 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5976110 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10557396 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1019475 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1932376 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2146241 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2147595 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2158088 30990063 ~ 30996363 (+) True G72787

Expression Profile