RNA id: TU90446


Basic Information

Item Value
RNA id TU90446
length 616
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G72370
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28925630 ~ 28994350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgattttcaTNNNtttttttaattaattatacaatacaatgtttacaagacaatgttttatcattaaaattacaggCAAATGCTTCTCAGGTAAATTTTTCCTGGCCTCCTAGCAACTGAGGATTTTCTATTATCTGAATCTCAGCCAATGAGTTCCTCATCCACCTAATAGACACTCATACAAGACAGTGTCCTAGTCCTGCCCTCTTGATAGGAAGGATATATCACAAGAACCATCTCAATTACTTGCAATTACCCACTTTTCTAAAACTTACTATATAAAGACCTACCTCACTGTCCTTGTTTGTTGAGTAGAAGGATTGTGGTGGTTTTGACTgtgttaacatatatatatatatatatatatatatatatatatttaaggattgcttgtgtttttgacttggaCTGTTACTGAGAACCCTGATTTTAATTGAtggtaacaaagaaggaaaccgttaaggattaaggaattggtgtgggagaaatatcgaattggaattgaatttgcAGAATTTATCCTAATTTGGAATTGAGATTAActgaattgaaaaggaatttaggaaaGTGTATTGgataatgaattgatttgatggaataagggtgtctgccaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90409 lncRNA downstream 104554 28820820 ~ 28821076 (-) True G72334
TU90399 lncRNA downstream 146337 28776227 ~ 28779293 (-) True G72324
TU90398 lncRNA downstream 149893 28775281 ~ 28775737 (-) True G72323
TU90393 lncRNA downstream 157301 28767600 ~ 28768329 (-) True G72318
TU90391 lncRNA downstream 159541 28674381 ~ 28766089 (-) False G72317
TU90506 lncRNA upstream 152493 29146843 ~ 29147168 (-) True G72414
TU90515 lncRNA upstream 194340 29188690 ~ 29189044 (-) True G72423
TU90530 lncRNA upstream 223430 29217780 ~ 29218033 (-) True G72438
TU90574 lncRNA upstream 355728 29350078 ~ 29351654 (-) True G72472
TU90580 lncRNA upstream 401136 29395486 ~ 29398305 (-) False G72477
AMCG00014718 mRNA downstream 430604 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 431144 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014717 mRNA downstream 435067 28487629 ~ 28490563 (-) True AMCG00014717
AMCG00014716 mRNA downstream 545577 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014715 mRNA downstream 610232 28289355 ~ 28315398 (-) True AMCG00014715
AMCG00014731 mRNA upstream 1586 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014732 mRNA upstream 29428 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014735 mRNA upstream 357398 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014742 mRNA upstream 459692 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014744 mRNA upstream 495715 29490065 ~ 29507061 (-) True AMCG00014744
TU90285 other downstream 593148 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17263137 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18127483 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19608463 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20541406 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 394940 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3268817 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3603112 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3603112 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3807508 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile