RNA id: TU90515


Basic Information

Item Value
RNA id TU90515
length 355
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G72423
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29188690 ~ 29189044 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCACAGGACTGCcacatactggatgtttttcccttttcacaccattctttgttaAGCCTAGAattggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccatgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttgattagaaaattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatatatatatatataaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90506 lncRNA downstream 41522 29146843 ~ 29147168 (-) True G72414
TU90446 lncRNA downstream 194340 28925630 ~ 28994350 (-) True G72370
TU90454 lncRNA downstream 197470 28989465 ~ 28991220 (-) True G72375
TU90409 lncRNA downstream 367614 28820820 ~ 28821076 (-) True G72334
TU90399 lncRNA downstream 409397 28776227 ~ 28779293 (-) True G72324
TU90530 lncRNA upstream 28736 29217780 ~ 29218033 (-) True G72438
TU90574 lncRNA upstream 161034 29350078 ~ 29351654 (-) True G72472
TU90580 lncRNA upstream 206442 29395486 ~ 29398305 (-) False G72477
TU90604 lncRNA upstream 232216 29421260 ~ 29423372 (-) True G72495
TU90655 lncRNA upstream 371494 29560538 ~ 29562066 (-) True G72535
AMCG00014732 mRNA downstream 156782 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 175635 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014730 mRNA downstream 237338 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014718 mRNA downstream 693664 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 694204 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014735 mRNA upstream 162704 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014742 mRNA upstream 264998 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014744 mRNA upstream 301021 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014748 mRNA upstream 426477 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014750 mRNA upstream 461394 29650438 ~ 29651309 (-) True AMCG00014750
TU90285 other downstream 856208 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17526197 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18390543 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19871523 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20804466 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 200246 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3074123 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3408418 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3408418 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3612814 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile