RNA id: TU90574


Basic Information

Item Value
RNA id TU90574
length 1577
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G72472
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29350078 ~ 29351654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacaGTAGGAACCCCAAATCCTATTTCCTCTGCTCTGCTTTATTAAcattacaagtttaaaaaaatatattttatattattattatgatctaAATCATGATCATAATTGAAACAACCGAGAGCAGCAAACAACAAATAGTAGAGGGAAATTCCTAATTATGGAAATGTCTTAAAATTTATAaaaatttgcattgttttgtcgAATCTCTAACCAAATGAGTCATGTTTCATTTGTGACCCCACACCTGAAAGCAAGAGGCCCCTCACTTCCagtaacatttaataataaactggAACTTAAAAAATGGCAAAATTAACACTCCACACAAGTTTCCTGTGAATGCCACCCCACACTCctttttgttgtcgtttttattttttttatttttctaagtaCTGTATTGGATGGGTCTGAGCTGTGTTTCTTCCTGTAAATCATGTTTCAACGATGGATCTAATCTTTACAGGGTTTAGTAATGAGTGTAGGGCCTAGTCCTGAgatatagatttgtattttttgtcataTCTCTTTAATTCTTGATTATCTAGGGAGTTGGAAAATATCAGTGATAGTCACTCACACAGTATTCACACAGATCTGTTTTTCATAGTatccaaacaaaatacatactaGCACATTATTCAGTTGGCAGAAACATGAAAACGTTAGATGTTTGGACAACATTTTTGAGTTTTGAGTACCATACAATGGTCCATTGCTATGATCAAAAGCACGGTTTAAATTTTTCACCATTGTGACCATTTTCATATGCCCTTTTCTATTGATTAATACACTGGTTATTTTTAGAACTACAAAGAAATGTGGTCAACTTTGATACAGTTATGGacttattaacttattttattgaGCTGTAGACTTGAGACCTCCAGTTAAAGATGTGCTCTGTGAGTTAGTTTTGGTAGAAGTTATTATATACAGACAAATGGATATGATTTTCTAGATGACAGTGTGTTCAAAACGGCAAAGTCACAGAATGATGGTGGAACAGAAAGAGCTGTACGGAAACCTCTTTTGATTGTATTACAGATCTGTGGTCAACATATGATTCATGAATGCATAGTGTAACACTTGAAGTCATGGTTAAGGTCTATGATGGTGACCTATTTGATAAATCCCCCCCACTCCAAAATGAAGtagatacagtacagtatttcagtttgcaaattgcacatttgtaattgtgaatatatgttttttagtCTAGAAGTTGCCCATTTGCAAGGctcacatatttataatgtgtttatgtaaGTATAGTGTGTTATCAATATACATCCTGTGAAATGTTGAGCAGCCCCCCAACCCAGCCTTATTGTTGTTGCCTGTTGCTCAGGAGGTTTTAAAATGCCTTCCCTGTCAACCTATCTGAGACCATTGTAATTGTACAGCTGCTTTGTGTTACACAGaatgtgattgtattttaatgtcaaggtatgtattgtaaaaaaaagattttatcaTGAAAAGTGCTCGCCATAAATACTTATGCTATGTtttaacatacatgtataattatgacaattaataaattaacaaatatctATTGTAATGCAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90530 lncRNA downstream 132045 29217780 ~ 29218033 (-) True G72438
TU90515 lncRNA downstream 161034 29188690 ~ 29189044 (-) True G72423
TU90506 lncRNA downstream 202910 29146843 ~ 29147168 (-) True G72414
TU90446 lncRNA downstream 355728 28925630 ~ 28994350 (-) True G72370
TU90454 lncRNA downstream 358858 28989465 ~ 28991220 (-) True G72375
TU90580 lncRNA upstream 43832 29395486 ~ 29398305 (-) False G72477
TU90604 lncRNA upstream 69606 29421260 ~ 29423372 (-) True G72495
TU90655 lncRNA upstream 208884 29560538 ~ 29562066 (-) True G72535
TU90650 lncRNA upstream 295934 29647588 ~ 29649642 (-) True G72530
TU90712 lncRNA upstream 387553 29739207 ~ 29743212 (-) True G72581
AMCG00014732 mRNA downstream 318170 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 337023 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014730 mRNA downstream 398726 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014718 mRNA downstream 855052 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 855592 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014735 mRNA upstream 94 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014742 mRNA upstream 102388 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014744 mRNA upstream 138411 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014748 mRNA upstream 263867 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014750 mRNA upstream 298784 29650438 ~ 29651309 (-) True AMCG00014750
TU90285 other downstream 1017596 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17687585 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18551931 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20032911 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20965854 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 37636 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 2911513 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3245808 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3245808 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3450204 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile