RNA id: TU90581


Basic Information

Item Value
RNA id TU90581
length 2514
RNA type TUCP
GC content 0.40
exon number 2
gene id G72477
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29389290 ~ 29398305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTACAAGAAGAGACCACCTTTGTCTTGCTGGAAAAAATAACTTCTAAGTAGCCTTAAGCCTTTTTGACATTTATTAGAAGAAATAACACAGGCTGTAGAAGCACtacaaagtttgttttattgagaaagcaagcttttttttttttcttaaaaaaagaagaaaggtaaCAAGTccaacatttcaaacacattttggtCATTGTAAGACTACAACAAATTCTATGTGGGTACGAACAATCTCATCTCTCCCTCAGAAACGGCCGGATCTCTCCCGATCCCTCGATCTTCTCCTCTCGCGGTCACGCCCCCCGCCTCCACCTCTGCCTCTGTCCCGGGAGCGGGAGCGACGTTCACGAGATCGCGAGCGAGACCGGTGCCTGAAAAGGAAGCGGACGCAGAGTTTTTAAAAGGCGTGCTGATGAGCCAAGGTGCTggcttttcaaatacaattttcatgGTAGCGGATATAAATCTGAGCTCGACTCACAAGTTTGTCCTCACACTGAGATGAGTTGTCTCGTCATAATTCCTTAggtacaaagtaaaaaaaattaatccaCAAGTCGTGTTTGCAGTGTgaagtgtgctgtagtgtactTTCTGCATCCTCCTGCTTTCTTTTAAAGACAATTAACTTCACACAAAACCTCCCCACTACCTTCAGGAGTTTTCAGCTCTATATATAACTGGGTTGGTGTGTGGAACAGGGAGGAGCGGATACCAGAGTCTAGAGCTTAAAAcgtatgtgaaaataaaatgaaacatgcaTGACAATCCCTTTTTTTAACCAATGCCCTCATGAAGATCATGAGCCcatcaaaaacagacattaaaggcaataacaaatgtataatttcactGGTAAGTAGAAGATGGTTGAGGTCATCATTTCAATAAGTGCTGAAACTCAATGAAATGGGTTATTTCTCTTTGATAAAACTCAGACTTGTTTGACACGATTCCTAGCTGCAGTGTTAAACCCATACATTAGAGCCTGCCAAAGCCTCAATCTGTGGCCTAGCTGAAAAGTAACAACTAACAcagctttacaaaaaaaaaaaaaaaaaagtaaaacctaGACAGCTCTCTCATGGAattagaggagaaaaaaaagcaaaccaagAAAAGGTCTGTGTTCCTTATTACAGTATGAAGGATGAAGACATCTTTGAAGATTGTGGAGATCAGGTTCCCCTTTCAGAATCATCTGCCAAGTAAGATCTGAGTCCTCATAGACTGCTCAAATTGCCAGACACATACTAGAGTAAAACAGAAGCTGCTGGATGGGGAGTCTCTGATTCAAACACAGTCCAGCCTAGCAAGTCTGGTATAGCAAATATTAAGTCAACATCTGTCATTAAGCACCTTTAAATGGCTCAAATCTGGGAAatgagggagggggtgggttGCAATCGATTAAACCTGCATGGGTCCAAAGGTTCCTGCAGAATACGCTAAATACTTTGAAGTCAAAAACCTTTGATTGAAATCAAAGTTTAAAACCGAATGCAGAAAGAGGAAGCACAATCAAGTTCAAGGTTTCCTAGGCCAGATCTTAATgagtaacaaacaaaacaagaacaaaaccatCTACAGTATACATGAAAATGGAGGACTGCCAGCTCTTCATGAGGGACCTGTATTACGGAGTGCAGGCAGGGATCAACTCATTTGGCTTTCCACATCCACTGGTTACCATTGTAGGAGACTCCAGCAGCTTCCCATAGAGCTGCCTGTGCACCCCAGAACAGTGCCCCCCCCCAGACGGAGTCCGTCTGAATCCTGGCATCAAAAACAGATGTTTGCCAATTGTGGACAAATCCCTTCTTCCTTAAATAAATTCCCTCATACTGATAGAGGAAGAAGCTGGGGGTTCCAAAACCCCTATGAAATGGCGAATAACTTGATTATGGATGGGAGTGCCTTGCTTTTGCCAAGTAATGAGGATGCATCTATGTCATACTGAAGATTAACTTATTGTGCATTACAAATGTTCAGATGATGCAGCTATTTAGTACTTCCTTTTGTCAGTACATTTTGCACTTTAGTACAAGCAAATTTCCAAAAAGGCCAGCTGCTCACAAGCTTACCTAAAGAAGCTGCATTAGCAAACAAAAGTCAACATTTCCCAATTCTCTGTGGTTAATATTTTAGCAGGCAATTTGCTTTCAGAATTAAACACCTTGTGCTGCAGAGGCTGGAAAAATGTAGCTGTAGactaattttaatacattaagaGAACAAAATTGACAACATAAAAAATAGATACAGAAAGGGAGTCCCGCACTactattaattgaaaaataattatgagGGAGAGCACTTTACTTTGGATGTTTACTTCTAAGTTGCTACTTTGTGAATGGTGCCTACTGGAATGAAAGTGCAACATTTACTGTCAGGATAACTTATCTAGGGTTTCCTTTTACAGGAAAAAATACTTCTAGAAGCAAGATAATACTGATACGGCTTTAGAAAGTAGGAAAGAGGGAAGAGAGCAGTTGGTAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90574 lncRNA downstream 37636 29350078 ~ 29351654 (-) True G72472
TU90530 lncRNA downstream 171257 29217780 ~ 29218033 (-) True G72438
TU90515 lncRNA downstream 200246 29188690 ~ 29189044 (-) True G72423
TU90506 lncRNA downstream 242122 29146843 ~ 29147168 (-) True G72414
TU90446 lncRNA downstream 394940 28925630 ~ 28994350 (-) True G72370
TU90604 lncRNA upstream 22955 29421260 ~ 29423372 (-) True G72495
TU90655 lncRNA upstream 162233 29560538 ~ 29562066 (-) True G72535
TU90650 lncRNA upstream 249283 29647588 ~ 29649642 (-) True G72530
TU90712 lncRNA upstream 340902 29739207 ~ 29743212 (-) True G72581
TU90767 lncRNA upstream 548412 29946717 ~ 29947061 (-) True G72629
AMCG00014735 mRNA downstream 5842 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014732 mRNA downstream 357382 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 376235 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014730 mRNA downstream 437938 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014718 mRNA downstream 894264 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014742 mRNA upstream 55737 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014744 mRNA upstream 91760 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014748 mRNA upstream 217216 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014750 mRNA upstream 252133 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014749 mRNA upstream 259968 29658273 ~ 29659385 (-) True AMCG00014749
TU90285 other downstream 1056808 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17726797 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18591143 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20072123 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 21005066 8383285 ~ 8384224 (-) True G69156
TU91283 other upstream 2864862 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3199157 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3199157 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3403553 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 5371278 34769583 ~ 34769979 (-) True G73328

Expression Profile