RNA id: TU90604


Basic Information

Item Value
RNA id TU90604
length 2022
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G72495
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29421260 ~ 29423372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATAAGACAAAATACTGTATTCAGGAAAATTTATTCAAAGCCAgatcatttttttcattgttgtaGTTGaagataaatgcatttaaaaatcaacaagaaCACAGCCAAAACCCACATCGCAGATGCCTTTTTAACCCACACAGAAATGGttatgaagaaacaaaagatGAACATGAGAAGGACAAGATCCAGAAGTTTGTCCGGTAGTGTTGTCCTGAGTTGTGCCAGGTCTGTGGTAATACCGGGATTGACATCACTTTCTACAATCAATTTGGTGAGGGAAAAGGGCAACCTAACTGCATAACTACCACCTGCCCTTCCCATTTCAATCTGAATTTGATTGAGCAACATAAcaaaaaatccttaaaaaagATCCTTAAAAGTAGTATTATAAGGGTGTCTCACTCTAACAAATGCTTTCTATAAATCCAAGAAAACACtgtatcaaaaaacaaaacaaaacaaaaacaacgtATCCAACAGGAAGGTCTCTTCAAAATACACGCTGTATGGAGAGGCCGTTTGAAACCCCCACTAAAAAGCACTACTATATCTTGTTTCAATACAAGATGGAAGGAAATCAAATGGCCCAAACAAATCTACATCCTGCCCAGCAAGGTCATTTTcgaagattatttttaaatgacagaacaGTGTTACCAAAATCACTTTAAGCAAAGTTCAGCTGTAGCTTGCTCACTGTCAGACACAGTAGTTTccatcataaaaaatataatgcacataATACTGGTGGTCAGTCTCCTAGGAAACATAGGCCACCATTTCAAGTTCAATCTTTGGAAAATTATGGAcagtcaatttgtttttctggtaAAGGAGCCTTTTTATGTTTCAGGGGGAGAGGTAACTTTGAAAATGCCATTTCCCCATTAAGGTTGAATGATTTGTATTGTCTACCGGTTCTATTAGTCACTACCGatgttaaaataagtaattcctAAAAAGTCTGTGACTTAAAAGTAACAAATTGAATGAAGGAGGTTCAACCATCCTGATTTTCTTTACCAGAAATTACAAATGCTCAGCCATTACTAACAAATACTTGCAAATAGATAAAAATAGGAATACTTATTGAAAAGGATGCATGTGATACAGGTATCAGATCATCTGCCTTTGGACAAATCATAATGATAGTCCTGGCTGCAACTCAAAATCCGAATCCAACAGAAACTGATTAGATGCAGAAATTAATTTACTGGGTCACACAATCTGCCTTGTGACCAGAAGCTTCTTAAATCAAATGGCACAAACTAGGTACagaagaacaaagtttacaaaatgagaggaggccataataaaaataaagaccttTTGTGTCACctttgtatttgattaatgtTACCCACATAAGAGTGTAGCTATCTTAGGGTGACTTCTCATTCAAGTCATTAAGAGAGCATGCCACTTTCCCCCCCTCGTAGAAAGTGTAAGCTACtgtaagaaagagagagataagaCTATACACAGGAATTATTACAGCTTAGAAGCAGCCTTATGCTGAAGGAAATGTCTCATGTGACTGTAGTTGCCCTAAATAAATTTCAGGGAGTCGTCAGAGTGACCGAAGAAAGTTAATTTGCAGTGATATATGGAATATATCGTTATTACATTATGCAAATGATTAACAgtaacaaaaaggaaaaaaggacaATAAAGATTTGAAGATGCCCTATTTTCTTTACAGTATGGAAGTGAAATGTCTGTCATTTTAGATAAATCATGTGACCTCAGATTTTTATGGAGTTTAGTACTTGATGAGGGCTATAGGCAGTGTAAAGGTAAGGGTTGCAATGGAGTCTACTTCTACAAATAAAGCATGAAGGTTTATTACATTCAGTATGGAATCTCTGTCATGCAGAGGCTTGTCAGGAGGCAGGCCCTTAGTTGTCGCCGTGCTCCTTCTCTTTGGCTGTGACATAGTTGAGGAGGTCGATGGCTGTCACCACGCCAAACACCATCTGCTTGTTGCAGGATGAGCCTTCGGCAAAGTCTGCAAGAGA

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90580 lncRNA downstream 22955 29395486 ~ 29398305 (-) False G72477
TU90574 lncRNA downstream 69606 29350078 ~ 29351654 (-) True G72472
TU90530 lncRNA downstream 203227 29217780 ~ 29218033 (-) True G72438
TU90515 lncRNA downstream 232216 29188690 ~ 29189044 (-) True G72423
TU90506 lncRNA downstream 274092 29146843 ~ 29147168 (-) True G72414
TU90655 lncRNA upstream 137166 29560538 ~ 29562066 (-) True G72535
TU90650 lncRNA upstream 224216 29647588 ~ 29649642 (-) True G72530
TU90712 lncRNA upstream 315835 29739207 ~ 29743212 (-) True G72581
TU90767 lncRNA upstream 523345 29946717 ~ 29947061 (-) True G72629
TU90785 lncRNA upstream 545283 29968655 ~ 29982575 (-) True G72642
AMCG00014735 mRNA downstream 37812 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014732 mRNA downstream 389352 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 408205 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014730 mRNA downstream 469908 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014718 mRNA downstream 926234 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014742 mRNA upstream 30670 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014744 mRNA upstream 66693 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014748 mRNA upstream 192149 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014750 mRNA upstream 227066 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014749 mRNA upstream 234901 29658273 ~ 29659385 (-) True AMCG00014749
TU90581 other downstream 22955 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1088778 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17758767 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18623113 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20104093 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2839795 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3174090 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3174090 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3378486 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 5346211 34769583 ~ 34769979 (-) True G73328

Expression Profile