RNA id: TU90650


Basic Information

Item Value
RNA id TU90650
length 1460
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G72530
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29647588 ~ 29649642 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attaaagtacaCACCAATCTAAAACTGAACCCTTATGCTGAAATCCAAGTTGGAAGGgggatttttctattttatttttaaagattgcaCTATGCTGGTGGCACCCTTGGCACTTGTTTGCTACTAATAACCAGCTGAAGAGCAGCAGCTCTTAATATTAATACGACAAAAAGCAGATTATTATGAGTGTTTGCATTTGGTCATGTGCAATAGATTTAAAATTAGTTACAAGAAAACAACTGGTAGAAAACTTAAAACTAAGGGCAACttaattcaatgttttgtttctccatGGATTGCAGAAACCAGTGGGCAGTAGAGCAAGCTGGTGTTTTTGCCAAGGAAAATTGATTTTCCAAAACAACTTGTTTTCAAAATGGCACAATACTCATTATACAGTTTTGAGATCAGCCATGGATACTTTAGAATTTGTCAGAGACTGAGCTGAGCACTCTTGCTTAAATCTGGCTCCTGAAGAAATAGCCAATCTGGTCTCCTCTCCTTGCCATCAACATACACCATATGCTCTGCCCAATCAGGAAAAGATACAGTTCAGTAGCTCAGCATCTCATTAACTTAAAGATGATCTACACAGGTGTCAGGGCAGTAGGTCACCAGGATATTGGATTAGGGAGGATTCCAAAttaaggcaaaaaaataaagtcagtTTCTTATATATTACACAAGATCGTTTCCCTGGTACTTCTAGGGTTTCTGTACCAATTGATCAAAGAAAGAACACTCTCCCTTTTATGAGTTATAAAACCTCAAACATGGggaaaagattaaacaaaaaacatacagtcTATGAtgtcaacacaaaaaaacattgaaaactgagatgttacattttaaacatttaatctggtacaacatcaaaatatatattgaaggTTAAGTCCATGGAATTGGAAAGAAATCATTGAATACAGATCCAAAAGActgcagacaaaacaaagaTGGTTTGAAAAGGAAACCGGATGGCGTATATGGAACGCCACAGATATTGAGAATGAGGACTATGAAGCACAagtgagagagaggtggggggagggggtgtggaGCCTTGGAGGACAGGAAGCCATTGCAGTCTAGTTGTCATCGTCAGAGTCGGATTCATACCCTCTACCCCGTATTGTCTTCTTCTCTACCTTCGTGAACTTTGACTTGGGCTTCTGTCCCTGAATGGGAGGCTCCATCAAATTTCTGTAGTTAATGATTTCTGAGCAGCCCAAACGCCATTCTAAGATTTCCGTCGTGAACTCATCCGTGTTCCCCAGATCAGTGAAGCCGACCACGTAATCTTTGGTCTTGCCGTCCTTCACCAGCGCCAGCGTGGGGATGACTTTGACGCGCAGTCTCTCGGTGAGGAATGGAGCCTTCTCTACGTTCAGCTTAATGAACTTCGTCTCCAGGTGTTTCTTGGCCAATATGGTTAGGTGCTTGTCCATAATTTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90655 lncRNA downstream 85522 29560538 ~ 29562066 (-) True G72535
TU90604 lncRNA downstream 224216 29421260 ~ 29423372 (-) True G72495
TU90580 lncRNA downstream 249283 29395486 ~ 29398305 (-) False G72477
TU90574 lncRNA downstream 295934 29350078 ~ 29351654 (-) True G72472
TU90530 lncRNA downstream 429555 29217780 ~ 29218033 (-) True G72438
TU90712 lncRNA upstream 89565 29739207 ~ 29743212 (-) True G72581
TU90767 lncRNA upstream 297075 29946717 ~ 29947061 (-) True G72629
TU90785 lncRNA upstream 319013 29968655 ~ 29982575 (-) True G72642
TU90789 lncRNA upstream 404698 30054340 ~ 30055173 (-) True G72646
TU90803 lncRNA upstream 517075 30166717 ~ 30166926 (-) True G72659
AMCG00014748 mRNA downstream 3885 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014744 mRNA downstream 140527 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014742 mRNA downstream 183712 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014735 mRNA downstream 264140 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014732 mRNA downstream 615680 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014750 mRNA upstream 796 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014749 mRNA upstream 8631 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014756 mRNA upstream 185609 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014755 mRNA upstream 193782 29843424 ~ 29852958 (-) True AMCG00014755
AMCG00014759 mRNA upstream 265613 29915255 ~ 29940883 (-) True AMCG00014759
TU90581 other downstream 249283 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1315106 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17985095 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18849441 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20330421 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2613525 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2947820 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2947820 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3152216 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 5119941 34769583 ~ 34769979 (-) True G73328

Expression Profile