RNA id: TU90655


Basic Information

Item Value
RNA id TU90655
length 1529
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G72535
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29560538 ~ 29562066 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttattacaaaaggtTTTTGGAAACAAAGGTAAGGCTTATTTTGTGTGGTTAAGGTACAAATGCCTTACCTGGTTATTTTCTGCTTAGGACAAGGTGAATGACAACATTTTCTGACAGTGAGAGACCGTCTTAATGTTTGCAgtttataacaaaaaacaaacaaaacaaaacacacatatccACTGGAACCGGAATCATTTTGTACCAGATGTTCATCTTTCTGATGTTCTCTCAGCCCTGCATTATCAAAAATCTGTGAGCTTTATCTCATAATCCAATTTGAAGAAATACAGTTCTAGGATCCATTGCATCATTTCCTCTCTGTACATAATTTAGTTATGTTTCCAAAGGGTGGAAGAGACCCAAGGGAGCCCTAGCTTGAGAGGTTAGGTGTTCAGCATGATCCTTTCAGAATAACACCTTTCATCATTGAGTATTGGGCTGTGTCACgcaacaacagcaaaaatatACCCAATAGCAGAATGTAATATTAGATTTGAAAGACCATCTAAAATTAATAGGCTTTTAAATACCACAGCTGACATTTAgtcaatttaatatattcacacaccccttttctttttactaTGGACTTTTCTGCTTATGATAGTCTCTGCATAGTGCCTACCTACATAAAGACAGTACTGTATAACTCAATTGACATTAACCCATCCTAAATCAGCTCTCTCCATTTGTTATAACCCAGGCAAGTTTTGAGAAGACCCAATTCACAGTTGATCTCAGGGATATCAAACCGATTTTCcaaacacattcacaaataATTCAATGTAAAGCCAGTGTCTTCATAAAACCTTTGCAACCTTTTTGTGTAGCGTGGCATGATGGGAAGTAAAAGTTGAAGCTGCACATCATAACTCACATTTTTGGATTTGCTGCTTTTCAAAAAGGTGACCCAAGTTctgttgtgaaaatgtttgcaaaCCAAACCAGGCTTAGCTTTGGAAAATCcaaaaccaaccaacaaacaaacaaacaaacacacaattagaTTTCAAAGTAAATGCCTTGGTGTCATTCTGCGAGTCGTATAGTTTCTGTGAGTAAAAAATCACAGATCATTTAACTACACAGTTTAGGCACTGAATGATTATTTGTCACATAGGGTTCATTGTAACCTTTTGTTCTCCTTTTTTACAAGCTGTAGAAGAGAATTGGCCACTTATTGTTTACTGCATTTTCCAGTCAGCTGTATATTCAATTGTCTTATGCCTACGCTTCCTCGACTCACACTGGAATTGACACACCTATAATGGGTGCCACGCAGCCTGAACTAGCACACAATGCCACTACTCCACAAAGCCAGGGATTTATATGTGATTTCACTAGGaccaatattatattttcttgcgcttttactgtattatattttgtgaaatgtgtacattttgtgacaactTTAAGTTGGCCTGGGTAAGTGTcaataaatcattaaacaaataataaataaataacgatgatgataataataataataataataataataataataataataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90604 lncRNA downstream 137166 29421260 ~ 29423372 (-) True G72495
TU90580 lncRNA downstream 162233 29395486 ~ 29398305 (-) False G72477
TU90574 lncRNA downstream 208884 29350078 ~ 29351654 (-) True G72472
TU90530 lncRNA downstream 342505 29217780 ~ 29218033 (-) True G72438
TU90515 lncRNA downstream 371494 29188690 ~ 29189044 (-) True G72423
TU90650 lncRNA upstream 85522 29647588 ~ 29649642 (-) True G72530
TU90712 lncRNA upstream 177141 29739207 ~ 29743212 (-) True G72581
TU90767 lncRNA upstream 384651 29946717 ~ 29947061 (-) True G72629
TU90785 lncRNA upstream 406589 29968655 ~ 29982575 (-) True G72642
TU90789 lncRNA upstream 492274 30054340 ~ 30055173 (-) True G72646
AMCG00014744 mRNA downstream 53477 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014742 mRNA downstream 96662 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014735 mRNA downstream 177090 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014732 mRNA downstream 528630 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 547483 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014748 mRNA upstream 53455 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014750 mRNA upstream 88372 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014749 mRNA upstream 96207 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014756 mRNA upstream 273185 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014755 mRNA upstream 281358 29843424 ~ 29852958 (-) True AMCG00014755
TU90581 other downstream 162233 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1228056 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17898045 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18762391 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20243371 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2701101 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3035396 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3035396 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3239792 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 5207517 34769583 ~ 34769979 (-) True G73328

Expression Profile