RNA id: TU90767


Basic Information

Item Value
RNA id TU90767
length 345
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G72629
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29946717 ~ 29947061 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTTGGGTTTCCATGGCTCCCTGTCCATCCacagtaaatatgaaaatgctGGGTTTGATATGCACAAAAGCTATTCATAGTGTTCAAAGTCTAATGTTTGGCAGAAAATACAAGCCCAGTTAACATATGGTCCATGTAGAGAGATGAGGTTCATGGTGGCCTGCTTGTCGAATGAATTGCAGTCGAATTAAACTATTGAAACCACCATGTTAAACCTGGCTGAtaaatcatttgttttactgttgttacccaaatgttttttcaaGTGTCATTTTTGGGATGGATTGTTGTTAtcagaaaatcacatttaaacagatttgtaaatcaattttgattaataata

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90712 lncRNA downstream 203505 29739207 ~ 29743212 (-) True G72581
TU90650 lncRNA downstream 297075 29647588 ~ 29649642 (-) True G72530
TU90655 lncRNA downstream 384651 29560538 ~ 29562066 (-) True G72535
TU90604 lncRNA downstream 523345 29421260 ~ 29423372 (-) True G72495
TU90580 lncRNA downstream 548412 29395486 ~ 29398305 (-) False G72477
TU90785 lncRNA upstream 21594 29968655 ~ 29982575 (-) True G72642
TU90789 lncRNA upstream 107279 30054340 ~ 30055173 (-) True G72646
TU90803 lncRNA upstream 219656 30166717 ~ 30166926 (-) True G72659
TU90829 lncRNA upstream 264081 30211142 ~ 30211396 (-) True G72680
TU90837 lncRNA upstream 314276 30261337 ~ 30261604 (-) True G72685
AMCG00014759 mRNA downstream 5834 29915255 ~ 29940883 (-) True AMCG00014759
AMCG00014755 mRNA downstream 93759 29843424 ~ 29852958 (-) True AMCG00014755
AMCG00014756 mRNA downstream 105560 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014749 mRNA downstream 287332 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014750 mRNA downstream 295408 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014758 mRNA upstream 2970 29950031 ~ 29951305 (-) True AMCG00014758
AMCG00014762 mRNA upstream 265077 30212138 ~ 30217061 (-) True AMCG00014762
AMCG00014763 mRNA upstream 673444 30620505 ~ 30627347 (-) True AMCG00014763
AMCG00014764 mRNA upstream 683375 30630436 ~ 30646339 (-) True AMCG00014764
AMCG00014765 mRNA upstream 721465 30668526 ~ 30689037 (-) True AMCG00014765
TU90581 other downstream 548412 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1614235 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 18284224 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 19148570 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20629550 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2316106 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2650401 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2650401 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 2854797 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 4822522 34769583 ~ 34769979 (-) True G73328

Expression Profile