RNA id: TU90963



Basic Information


Item Value
RNA id TU90963
length 380
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G72783
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30955905 ~ 30956284 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAAAGAACTGCCACACAGTGCAAAAACGAAAACAAGCAAACCACTATAACCACAAAAGTCAATAGAAATTGATAAGACATGTGAATAAAGGTATCTGTTAAATATCCTTGCTTAACTTACAATTTCGGTCAGACGCTTCTTAACTGTTGTAGACTGGGTGGCTATACTGGCTTTGGATAGCAGCCTACTGACAGTGCGTCTCCAGCTCCCCTCTTACCTAGTGTTTCAGTGCGGCGGAGGTTTGGCACAACGATGGGCGAGTCAGCCCAGTCCAGCTTCCCTCGGGCCACCAGGTACTTTCTGGCTTTGCGGAGCATCCCTGGGAAGTCCTCCTGAGTTGCAGCAAAAGCTTCAATCCTATTCTTGACTGAGCCCAGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90941 lncRNA upstream 109484 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 111235 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 118736 30836836 ~ 30837169 (+) True G72767
TU90738 lncRNA upstream 1109319 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 1683387 29268329 ~ 29272518 (+) False AMCG00014738
TU90969 lncRNA downstream 47088 31003372 ~ 31003788 (+) True G72789
TU90976 lncRNA downstream 187139 31143423 ~ 31147877 (+) True AMCG00014786
TU90997 lncRNA downstream 321803 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 321803 31278087 ~ 31287434 (+) True G72815
TU91052 lncRNA downstream 505862 31462146 ~ 31463811 (+) True G72861
AMCG00014781 mRNA upstream 38339 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014771 mRNA upstream 104763 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014777 mRNA upstream 143618 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014768 mRNA upstream 214761 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014774 mRNA upstream 245485 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014784 mRNA downstream 67259 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 85607 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014786 mRNA downstream 189485 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014787 mRNA downstream 285017 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014788 mRNA downstream 341466 31297750 ~ 31308262 (+) True AMCG00014788
TU90928 other upstream 150164 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1104084 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2651832 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 3076105 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 3114034 27835503 ~ 27841871 (+) True AMCG00014704
TU90965 other downstream 21932 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 23286 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 33779 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 760834 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1586226 32542510 ~ 32561489 (+) True G73103

Expression Profile