RNA id: TU90965



Basic Information


Item Value
RNA id TU90965
length 610
RNA type TUCP
GC content 0.65
exon number 1
gene id G72785
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30978216 ~ 30978825 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GACAGAAGTAGGAGTTCTCGGCGATGTACTGTGCCACGGCCTGGCTGTCGGCGGAGGTCGCCATGACAAGGAGGAGGGCGTCACGAGCCTGCTGGCCAATGGCTCCATCACGGTGGATGAAGGGCACCAGCAGGGAGAAGATGAGCAGATTGGTGGGGCCTTGCTGGGAGGCAGCACGGAACAGCAGCTCCAAGATGGAGGGCTCCCTGGCCATGGAGACGCACACCTGGTtcagcagcagcaccaggcTCCCCTCCACCGCAGGAGAGCCCAGCTGGGGATCGGCGCACGTGCTCAGCAAGGAGAGGAGGGGCTGCAGCACGGGCTTGTGCTGAAGCAAGGGCTGCTGGGACTGGCCGATCAGCATCTCAAAGAGCTTGAGCAGCGCCCCCTGGCTGTCGGGGTCCAGGCCACGGCGCAGGTGCCACTGCACCAGCCGCTCCAGGATATTCTCGGACACCACCAGCTCCAGAATGGGTCCCATAGCCATCTGGTCCCCTGGCCGCTCCTCCGCCAGCAGGCACAGCATCTGATCGGTGTGGTTCCGCACGGCGCTCAGCTCGTCTGCTGCACCAGTGATGGAGCTCTCGCGCTGCTCCAGGATCCACGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90963 lncRNA upstream 21932 30955905 ~ 30956284 (+) True G72783
TU90941 lncRNA upstream 131795 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 133546 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 141047 30836836 ~ 30837169 (+) True G72767
TU90738 lncRNA upstream 1131630 29843467 ~ 29846586 (+) True AMCG00014757
TU90969 lncRNA downstream 24547 31003372 ~ 31003788 (+) True G72789
TU90976 lncRNA downstream 164598 31143423 ~ 31147877 (+) True AMCG00014786
TU90997 lncRNA downstream 299262 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 299262 31278087 ~ 31287434 (+) True G72815
TU91052 lncRNA downstream 483321 31462146 ~ 31463811 (+) True G72861
AMCG00014781 mRNA upstream 60650 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014771 mRNA upstream 127074 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014777 mRNA upstream 165929 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014768 mRNA upstream 237072 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014774 mRNA upstream 267796 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014784 mRNA downstream 44718 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 63066 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014786 mRNA downstream 166944 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014787 mRNA downstream 262476 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014788 mRNA downstream 318925 31297750 ~ 31308262 (+) True AMCG00014788
TU90928 other upstream 172475 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1126395 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2674143 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 3098416 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 3136345 27835503 ~ 27841871 (+) True AMCG00014704
TU90966 other downstream 745 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 11238 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 738293 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1563685 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 2385930 33364755 ~ 33366100 (+) True G73244

Expression Profile