RNA id: TU90966



Basic Information


Item Value
RNA id TU90966
length 683
RNA type TUCP
GC content 0.51
exon number 1
gene id G72786
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30979570 ~ 30980252 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATAAAAGCCTGTCCAAACTGGACACACATAAATTCTTAGCCTTGACATATCTCAGCAGTtccacttttttgttgttgttgttgttttttattgaagaagtgattttaattcaatgtaaGTTTTTCCAAGATCAAAGGGAGTAAAAAAGAGTTCTGCATTCAGAAGAGCCACCGACTCACCTGTCTCCAGTGGTTCTGAAAGACCATCAGGCATGTCTCCGGGTCAGCCATGACCGGATTTGAGGGCGCAGCATTGCGACTGGCCCGATTCCCGGGGGCTCGTGGGTTCAGCCGGCTGAGCCAGCTCATCCTGTCCACCCAAGGTCAAAGTTCAGGGGTCAGGGAAAAGGCACATGGAAAAGGAGGAAGGATGAAAGGTCAGTGTCCCCTGGGATGGGGTAGGGGAGGcgaggggggtggggtgggagggttgggggagggaggaagggaagggaaagaGGGGAGGGGAGCGGGAAATGTAATGGAAACCAAGAAGAAGTCTTTATGGCTTTGCAATACaagtctgtttttcttcttcttcagaaGCCCAACGGTAAAGCTTTCTCCTTGCAGGGGGTTGTCAGTTACGTCCTTCAGTCTTGACTAGTCAGCCCTCTTGTTGAGCCTGTCATCCAGTTTGCAGCCAGCGTCGCTCCATGCCCAACCTCTAACACCACAGATCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90963 lncRNA upstream 23286 30955905 ~ 30956284 (+) True G72783
TU90941 lncRNA upstream 133149 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 134900 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 142401 30836836 ~ 30837169 (+) True G72767
TU90738 lncRNA upstream 1132984 29843467 ~ 29846586 (+) True AMCG00014757
TU90969 lncRNA downstream 23120 31003372 ~ 31003788 (+) True G72789
TU90976 lncRNA downstream 163171 31143423 ~ 31147877 (+) True AMCG00014786
TU90997 lncRNA downstream 297835 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 297835 31278087 ~ 31287434 (+) True G72815
TU91052 lncRNA downstream 481894 31462146 ~ 31463811 (+) True G72861
AMCG00014781 mRNA upstream 62004 30907169 ~ 30917566 (+) True AMCG00014781
AMCG00014771 mRNA upstream 128428 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014777 mRNA upstream 167283 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014768 mRNA upstream 238426 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014774 mRNA upstream 269150 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014784 mRNA downstream 43291 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 61639 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014786 mRNA downstream 165517 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014787 mRNA downstream 261049 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014788 mRNA downstream 317498 31297750 ~ 31308262 (+) True AMCG00014788
TU90965 other upstream 745 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 173829 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1127749 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2675497 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 3099770 27868703 ~ 27879800 (+) True AMCG00014703
TU90967 other downstream 9811 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 736866 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1562258 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 2384503 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 3258682 34238934 ~ 34239400 (+) True G73292

Expression Profile