RNA id: TU90971



Basic Information


Item Value
RNA id TU90971
length 1266
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G72791
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30950110 ~ 30951375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtgtgtgtgtgtgtgagaccgAAAGCTTGCGttacttgtttttcttgaatGCTAAAATGTTCACTGACAGTGGGGGTAAGGGAAGGTTTTTCGAAAATGTCCCTGCGATTTATTGGGAAGAGGCtgaccaatgtttttttttgtttgttttttctagatcttgattttatttttcttgcttgtGTTTCTTCAAGAATGTCTGCCTTACGTTAATCTCTACTGCCTATCCCTGTCTTTAGTTAATGAGCCACAACCTGCAGAGCGAAATGCTTCCATTGGGGTGGTGGGGCAGGGGGTCAAGTCCAAAGCGACAATGAAGAGAATTCAAGCGGTTTCTTCTGTGTATAGAATAGGGAGGCCTGTACTGCTGTGGCCACAGATATTCAcactcttcatttgaaacagtgtGATTTAGTGATTGATTTAGTtaattcaatattgtttttaccTGTTCTAATCAATGCTATCTGTTGAGTTTTTTGAACACCGATCCCGACTAGAGAAAACTGTATAGATTTCAGGTGATCGAGGCGGAgcctgtaaacatttttaacttcTGACATCCCATTAATCTCTGAAGATTTCCGTTGTGGCAAGTCTGACGTTTAAGCTCCCCCTGTCCTATCTAAGGTCAGTGAAGAGGACAGCTCTCTCTAGGCCGAATCAGAGTTCCACTACCTCTCCAAAGACAACATTGATCAGTCCGTCTCACAAGCAATATTTATTCAACCAAATGAATTGCCCAATAACACGGTTTCAGAAGTAGGGTGGACTACCACTGTACATCCCAGATAGAGATGGTTCACTTGAAGGTGAACTTCATATAAAagttttcttttataatttACTTCCTCATTGTTTGTTTCCTTAAGTCCCTCCGTCCAAGTGACACATTTTGTCCCAAAGGCAAATTGTGCccaaaaatgtgtgattttgatAGTCTGCTAGCACTAACAATAACAGACattcttccttcctccagctatCATAGGTAGGCTTTCAAGTTTATAATCTAAAGCTGTGCCGTAATGGTTAGTTCCCCCACATGGAGAATTGTAATGATAATTCTCAAACTCCAACCAACACTATCTTTCCCCCAACAGCCGTGCTTTTCTTTATACTAAGCAACTGCTGCCCTTTTCCATTACTGTTAGTACTGAGTTAAGTAATTGCCCCAGGCTAATATCGAGCTCTCGGGTGCTAGTCTTTCAGGTGAGGCCATTTAGCACTTTAAATAAATTTTGTTCCCAGTGGGTTGAGCTTCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90970 lncRNA downstream 2767 30946090 ~ 30947343 (-) True G72790
TU90944 lncRNA downstream 105162 30841523 ~ 30844948 (-) True AMCG00014775
TU90943 lncRNA downstream 105982 30841523 ~ 30844128 (-) False AMCG00014775
TU90845 lncRNA downstream 554772 30395139 ~ 30395338 (-) True G72693
TU90837 lncRNA downstream 688506 30261337 ~ 30261604 (-) True G72685
TU91053 lncRNA upstream 510804 31462179 ~ 31463783 (-) True G72862
TU91063 lncRNA upstream 515117 31466492 ~ 31467056 (-) True G72868
TU91062 lncRNA upstream 529473 31480848 ~ 31485466 (-) True G72867
TU91073 lncRNA upstream 564055 31515430 ~ 31519849 (-) True G72874
TU91074 lncRNA upstream 564055 31515430 ~ 31519932 (-) False G72874
AMCG00014782 mRNA downstream 24903 30922355 ~ 30925207 (-) True AMCG00014782
AMCG00014775 mRNA downstream 103310 30842042 ~ 30846800 (-) False AMCG00014775
AMCG00014780 mRNA downstream 187049 30759157 ~ 30763061 (-) True AMCG00014780
AMCG00014766 mRNA downstream 254785 30689042 ~ 30695325 (-) True AMCG00014766
AMCG00014765 mRNA downstream 261073 30668526 ~ 30689037 (-) True AMCG00014765
AMCG00014785 mRNA upstream 1096 30952471 ~ 30979877 (-) True AMCG00014785
AMCG00014791 mRNA upstream 310341 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014790 mRNA upstream 327939 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014789 mRNA upstream 385738 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014796 mRNA upstream 518184 31469559 ~ 31471622 (-) True AMCG00014796
TU90581 other downstream 1551805 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 2617628 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19287617 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20151963 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 21632943 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 1311792 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1646087 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1646087 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1850483 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3818208 34769583 ~ 34769979 (-) True G73328

Expression Profile