RNA id: TU91144



Basic Information


Item Value
RNA id TU91144
length 291
RNA type TUCP
GC content 0.53
exon number 2
gene id G72925
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31717118 ~ 31754930 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCAGGGTTCGgggacaggacaactgcaccacatcaaagggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatgggtattccagcatgacaatgacccaaaacacacagccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagccta

Function


GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91127 lncRNA upstream 13545 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 14683 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 125013 31524315 ~ 31592105 (+) True G72875
TU91067 lncRNA upstream 193931 31520346 ~ 31523187 (+) True AMCG00014793
TU91052 lncRNA upstream 253307 31462146 ~ 31463811 (+) True G72861
TU91158 lncRNA downstream 35971 31790901 ~ 31792354 (+) False AMCG00014799
TU91238 lncRNA downstream 201322 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 210992 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 212426 31967356 ~ 31969205 (+) True G73018
TU91254 lncRNA downstream 217055 31971985 ~ 31995538 (+) True G73019
AMCG00014801 mRNA upstream 7599 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014800 mRNA upstream 20945 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014793 mRNA upstream 196714 31512808 ~ 31520404 (+) False AMCG00014793
AMCG00014792 mRNA upstream 386443 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014788 mRNA upstream 408856 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014805 mRNA downstream 9250 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014803 mRNA downstream 11134 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014799 mRNA downstream 36023 31790953 ~ 31798463 (+) True AMCG00014799
AMCG00014802 mRNA downstream 48000 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014807 mRNA downstream 110201 31865131 ~ 31890448 (+) True AMCG00014807
TU90967 other upstream 720755 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 736866 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 738293 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 911377 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1865297 29851450 ~ 29851821 (+) True G72605
TU91344 other downstream 787580 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1609825 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2484004 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3025192 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 3187081 34942011 ~ 34960447 (+) True G73343

Expression Profile