RNA id: TU91344



Basic Information


Item Value
RNA id TU91344
length 1181
RNA type TUCP
GC content 0.46
exon number 2
gene id G73103
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32542510 ~ 32561489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cagtgtaacttctatgcacaggagctgNNNNNNNGGGGTGTATTTCACCCCAATGTAGTCACAGATGTTTGTCCCTCTGGTCTCCTCTCCATTTGTCATGCCAGTATGTCTCGGAGGTGTTATGTAAGATTGCATTCCAGTCCTGATCAGGGGATGAAATGATTGATAGACTATTGTCCTTCTAGCACAGGGTTATCTTTCGAATTCGTAAACACAGCCCAATGGGGGAGGGGTTAAACCAGTTTCCATGGATACCTCATCGCTCCCTCAGAGCAGCCACCAGCACATACTGTGGCAGTAAATCCATATCCCGGTGGGGCCTCGGTCTGCCTTACAGATGTCACCAAATGAGGGGCTCCTGAGTAATCATTACAGTCTGCTGCTGAATCTGTAGGGGATCTGTGTGATCTCTTAGTTCTACCTAGAATTCAGCACAGCTGTATTACTTCCCTTAGAGTGCTTGATCTTCAGCTCTGCTGCAGGCCGTGTGGTCTTCAGCCTCTGGTTTTCTCTTGTGTTATAGCAGCCCGGTGCATGGCACACTTGGTACACAGAGATCTGCACGTCCCACAATGCACTCAATCGGTCCAGGCCCCCCCATGCAGTGCAGCACAGTACTGCACGTTGTGTCTGCAGTACACACGGCGCATGGTACAACAGTGCCACCTCATGGAGTGGTGTGTTTTGCTGCCAGACAGCAGACCTGAAattaagtttttcatttttatgggAAAGATTATGTCATTTTTCTGCGACCAGCTTTTAAGAAGAAAAGTGGCTATCTGGTTGGCACTATCACTGATGCCATTTACTCCATGGGTGCAGCCGTCTTGGATCACATTCTCGCGAGAGCTTGATGGTGGCTTGAGAGAATCTAAAATGGAGAAGTAATGATATGAACGATGTCGATGAAAACACTCCGCCCATGAAACGGCATGATAATGAAGCCTACAAGAGGTGAACATTACGCACATTGCAAGGTATGTATAGTTGGTATTTCCATAGCTCACAGTGGCCAGGATGACATACATTAACACAGGGCTGCTCGAtcttggtcctggagagcttcTATCCAGCAGTTTTCAGAAGTCACCCTtgtatcaccaatttataaacacctggatgtatttcattctgataaatgaagcaggtggtgtggtaaattcagtgCTTTAGAANNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91281 lncRNA upstream 285734 32256009 ~ 32256776 (+) True G73045
TU91254 lncRNA upstream 546972 31971985 ~ 31995538 (+) True G73019
TU91250 lncRNA upstream 573305 31967356 ~ 31969205 (+) True G73018
TU91249 lncRNA upstream 576321 31965922 ~ 31966189 (+) True G73017
TU91238 lncRNA upstream 579541 31956252 ~ 31962969 (+) True AMCG00014811
TU91345 lncRNA downstream 4304 32565793 ~ 32566896 (+) True G73104
TU91366 lncRNA downstream 13958 32575447 ~ 32575879 (+) True G73120
TU91410 lncRNA downstream 111022 32672511 ~ 32681805 (+) True G73158
TU91472 lncRNA downstream 243179 32804668 ~ 32806309 (+) True G73212
TU91485 lncRNA downstream 508514 33070003 ~ 33070214 (+) True G73220
AMCG00014815 mRNA upstream 145002 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014812 mRNA upstream 287219 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014810 mRNA upstream 528119 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014811 mRNA upstream 579539 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014808 mRNA upstream 626672 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014817 mRNA downstream 92254 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014821 mRNA downstream 173379 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014822 mRNA downstream 197476 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014827 mRNA downstream 1136034 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014831 mRNA downstream 2129596 34691085 ~ 34931860 (+) True AMCG00014831
TU91144 other upstream 787580 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 1546147 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 1562258 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 1563685 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 1736769 30764351 ~ 30805741 (+) False AMCG00014777
TU91511 other downstream 803266 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 1677445 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2218633 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 2380522 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 2829145 35390634 ~ 35394649 (+) False AMCG00014836

Expression Profile