RNA id: TU91437


Basic Information

Item Value
RNA id TU91437
length 272
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G73182
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32709844 ~ 32710115 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NgtcaaagtcgctcagatcgttacgcttgcccatttttcctgcttctaacacatcgacattgaggacaaaatgttcacatgcTGCCTattatatcccacccactgacaggcgccatgataacgagaatagtgttattcacttcacctgtcagtNNNNNNNNNNttatggctgatcggtgtatatataaattgctaaataaattaataattttgtcttcaaagttgatgtgttagaagcatcATCAGGGTTTACATCAGTGACCACACTCATA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91436 lncRNA downstream 1561 32708013 ~ 32708283 (-) True G73181
TU91379 lncRNA downstream 79323 32628529 ~ 32630521 (-) True G73132
TU91363 lncRNA downstream 135158 32569671 ~ 32574686 (-) True G73117
TU91353 lncRNA downstream 153899 32455306 ~ 32555945 (-) False AMCG00014816
TU91358 lncRNA downstream 186042 32523238 ~ 32523802 (-) True G73112
TU91438 lncRNA upstream 682 32710797 ~ 32711045 (-) True G73183
TU91439 lncRNA upstream 1132 32711247 ~ 32711703 (-) True G73184
TU91443 lncRNA upstream 78908 32789023 ~ 32790398 (-) True G73187
TU91487 lncRNA upstream 360134 33070249 ~ 33071524 (-) True AMCG00014825
TU91497 lncRNA upstream 537222 33247337 ~ 33247621 (-) True G73232
AMCG00014818 mRNA downstream 56424 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014819 mRNA downstream 60849 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014820 mRNA downstream 67912 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014816 mRNA downstream 154311 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014814 mRNA downstream 387085 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014823 mRNA upstream 81766 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014824 mRNA upstream 84890 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014825 mRNA upstream 360691 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014826 mRNA upstream 417563 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014828 mRNA upstream 1854371 34564486 ~ 34565202 (-) True AMCG00014828
TU91374 other downstream 90695 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 95038 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 446417 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 3311539 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 4377362 28329739 ~ 28332482 (-) True G72236
TU91480 other upstream 91743 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2059468 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 2870511 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 3391243 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 3543659 36253774 ~ 36254187 (-) True G73612

Expression Profile