RNA id: TU91533


Basic Information

Item Value
RNA id TU91533
length 201
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G73260
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 33778993 ~ 33779193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAGGGTTCCCTGTCCTGGGGTTAGAGACTtacctgctgtgatttatttttcggtCTTTGTGATGCAGACGGGTGACTGCGGGATAGAAGaaaagacattaattaattacatttgaatttgtgcaATTGGAGACTTGCTAATACttgttcctacctgcagttgttgaggtcccagttggccgacaGGGTTCCAACCCAG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0005634 nucleus cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91532 lncRNA downstream 76188 33645933 ~ 33702805 (-) True G73259
TU91512 lncRNA downstream 412910 33365708 ~ 33366083 (-) True G73245
TU91509 lncRNA downstream 459368 33319425 ~ 33319625 (-) True G73242
TU91497 lncRNA downstream 531372 33247337 ~ 33247621 (-) True G73232
TU91487 lncRNA downstream 707469 33070249 ~ 33071524 (-) True AMCG00014825
TU91537 lncRNA upstream 9663 33788856 ~ 33789222 (-) True G73264
TU91541 lncRNA upstream 31837 33811030 ~ 33811318 (-) True G73268
TU91543 lncRNA upstream 73502 33852695 ~ 33853024 (-) True G73270
TU91563 lncRNA upstream 344085 34123278 ~ 34123649 (-) True G73288
TU91566 lncRNA upstream 416774 34195967 ~ 34196246 (-) True G73291
AMCG00014826 mRNA downstream 344611 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014825 mRNA downstream 659665 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014824 mRNA downstream 972700 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014823 mRNA downstream 985568 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014818 mRNA downstream 1125573 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014828 mRNA upstream 785293 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014829 mRNA upstream 1131400 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014830 mRNA upstream 1163782 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014832 mRNA upstream 1393676 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014839 mRNA upstream 1802522 35581715 ~ 35592456 (-) False AMCG00014839
TU91480 other downstream 972698 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 1159844 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 1164187 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 1515566 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 4380688 29389290 ~ 29398305 (-) True G72477
TU91607 other upstream 990390 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 1801433 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 2322165 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 2474581 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 2593958 36373151 ~ 36393493 (-) True AMCG00014845

Expression Profile