RNA id: TCONS_00010930


Basic Information

Item Value
RNA id TCONS_00010930
length 4440
lncRNA type inter_gene
GC content 0.38
exon number 6
gene id XLOC_004711
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 23454429 ~ 23605722 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTTATATTGCGTAGAACACGTTGTAGTGATGTGTTCTAGTGATGTCATTACGCGACGACGTAACGGAATCGGCTGAATCGTGTTTTTGAACTGGATTATTAAGGGGTGCCTTTAGAATCTGTTTGCGCAAACGCACCTTACTTTCGGTCGTTATTGTCAGTTGACAGTCAAATTACTCATTACATCTGTTAACTAAAATATGCTTTTATAGAGGACTAAATCCCCTTTGGTGAACGCCTAATTTTTGAATCATAAGATTCGGTTCTTTTTGGAATCGACTCCGAGCCCAGCTGGCACATGTTTATGCGATTTTGTCACAGCTGGGTCGAAGAGATGTGCTCCTAAACTgcTCGAGAGACAGTCCAGACGAAATTTCTAAAATCTTCATGAAGAACGTGACATCATTTTGGATGGCCTAAGGGGAATTACCCATTGAGATGTGGACGGAACCTTGAGTAAATCCTCTGGAAACAAACAGaaccgttcttcaccaaacTCAAACCTCGTTGTCGCGGTCAGCTCCTCTCTACAGCTTAAGTCTGCAGATATACATGGCGAGCCAactggtcaaactggtaacattggaaaagctgtccatacagagatACCACCACATTACGTCACTGAAGGTCCTGGGTGTTCAAAAATGTAGTCACGGGCAGACATCGGCAGGAAAGATCTCTTTAAGGATGAAACAGATAATAATGTTGCTGTCTGTTTCTGGTCTTCCATGGTGGTTGTTGGTGTGCATTGACACATGAAGGCCTTCAGATGGAGAATGAGGCAGGGACCATATAGATGTGTCCTGAATGAGAGAGGAAGAGTCATCTGCCTCCTGCGGTCTGCCAACACACAGACCACCAGGGGAAGTGAGGGAGCGAAAAAAGAAAGAGGAACGGAAAGATAACTGGAGAGATTGGACAGTCGGGAGCTTTTGAAGAGAAGAAAGACCGAATTCTGCCCCAAGAACAGCGATAACGGACGCGGGGTCCCACTGAGGGATGATAGGACAGAGGGGTTTTTATGAAATATGAGAGTGATTCAAACGTATATTTGGTGAACTGCAGTTTTTAATGCTCATTTCTTCATAAATGCGTACTCTTTCTTTGTGTTTACACTGGCAGGGCAGTTTTGAATGTTTGCAGAATGTGTGGACTGTTCCGAAGCCGAGGCTCACAAACTACATGGTGGACAGTGTTGGGAAATCTGCGTCCTGTTTAATGCTTGGCAAACTTCTGCTGGCTGAAAACATCAGCTAAAGTCCCTCTGGCATCAAAACCAAAGACTTTGTAGTGTCAATATGTCAGTCTTAAGGTTATCAAAGCTAGCGTGCTCCATAACAGTAATAGCATTCACATTTAAAagataaaagcattaaaaaaacttttagttTTTACTTCTTCCAAAAAGAATCAACAATTCTTAGGACATAACTGTGCACAGTAGCTTTCTCACCAACcaattttgtgttcaaaagacatctaatagattTCCAATTATAGATGTCTCAGCTTAAACAAGACTAAATCTATTAGATGTCTAACAATAGTctagaattaattaaatacacAGGTTAGACAGTCTTTGCGTGTGTAGTTGTTCATTCctgcccaaatttagccttgttttctttagtcagctttatttctatagcgcttttttaaaatgtaaatttgtcaagCATGAGAAAAAGAGAATAAAAGCCATAACATAGTTACAGATAGTGAAATATTTCAGCTGATCAGGCAGGCAGGAGAGTAGAGCCGTAGAATGGAAATGAAAGTAGAGTTGTATTTTAGCTATGTTTGGACATTTATTAGCCATATGTTTTTATGCTTGCTGGATTTTTCACATCTAACCAAATGTTCCTTTCTATCGAATTGTCTAacacttgacttcttgttgatcatttggtatcagaagtggtttacaTGAAAGGAAAGGCCTctggattacacttattttaccaaaataaaatatgatcatgccttaacttttaataatttatttaggacAGTATGGTTTGACTCTGTTTAGACAatagtcttgtcatttaacagaaatattgtacagtatagaatttaaagtcatggtgcagtggaaaaataattcatattgtgtttgactcccattaGCTTGGATGattgcatccatccatctctgcaatgattcaaataacctattatttaagtcatctggaatggcaaagaaagctttctggcaggactcccagagttcatcaagattctttgaattcaccTTCAATGTCTTTTGCTTAATCTTACCCCAGATGCTCAAtgatgttcatgtttggtgattGAGCTGGCCCATCTTGGAGTGCCTTGACTTTCTTTATGAgaatgagcgctatcctgctgaagaacttgccctctcctgtggtgaTGGGCACATTTCTTGATACCTCTTGCATGCCCCCCATATTGAATGTAActctaaaccatgatttttttcttcaccaaacttggctgatttctgtaagaatcatcagagtccatgtgggttccaataggtcttctgcagtatttgtgatggttgggatgcagtttaacagatgagtcatctgaaaaatctaccttctaccacttttccaaatgatcaaccagaatacaagttattacttgttgcaCTTACAATTGGGATCgaagacaagacttttatcaggtagtgtaggtGACACAGTGTTGATCTGAACAACACTAAAAAGCAGGGATGCTAAAACTCAATGTGTGTATAAACACACCTTGTTATTCTAAACTGAGTGGGAAAGTGcagtgcacacacatatatacggtCAGCATATAGGCAATTAGAACGAACAAATCTAAGTCTGTTACACACAATAGCAGTTTCATAAATGGTGAATGGCACATGGTGTACTATAttaaccagtggttctcaaactgtgatacgtgtaccactagtggtacgcaggcttccttttagtggtacgcggaagaatgaaatatgtcatgtacatgctacacacatttcaaaatttatcaaaaatgatgtataaaatatgccatatgacatatagcctatatttctgaggtaatctgccacgtttttttttaactgtgttgagttgtagctgctttactgggcctactacgctactgtattttaacTGTACTGTTACTGCTCATTTTGAtggtacttgaagagacaatattttttctgaggtggtacttgatgaaaaaagtttgagagccaCTGATATAGACGATAAATGATTCAGGCAATGGAAATGTGTTTTCCATTGGGGTGACTGAAGTCTAGTTTCATGTTAATGTCACACAGAGCTGGTCTGCTTTGGTCACACGCATGGTCTGCTCTGGTCCAGAGACACAGTGAGCATAGACCACTAAATATATCAGGCCTATATGAATCGTACACCGAAATAAGCACACAACGTAGGCACACAAACCAAtttaatatgagcagaaaaacTCATTTGTTTGCCATTTTGGAAAAGTTCATGTTTTAGTTTTGTGCTTTTCATTTGTCATTTTATACGGGTTTTCATTTTTCGCTTTCATTTAATCGCTTGCATTATGTGATCTCATTGTTTCCTATTCTgcatttagttttcatttttgtgcGTTATATTATTACTTGTGTTGTCAGTTATTTGATTGACACATTATTTTTCGATGTGTGATATATTTTATCCAACAGAAGTGCTATGaacaaaatgcaatttttttaaaaagaggaggGGCTACTCAATATGTCCCAACCCTGTCTTCATGTTTAAGTCGAAATCACATCAAACAAGACTGTGCATTTCAAGATATTTTAGGGGATTTTTCAGAATCTGAAGCCATTTGTGGAGGTGTTTAGCATGCATGTGAGAAAGGTATAACGTAAGGTGTTTTTGACAGTATCCTGGCAGTATGTGTACCAGCGAGGTCCATGTTGAAATGAGAGAGCAGCACTTGATAGGTCAATAGATGGGTGAATGAATAGGTGAGTCAGTATTTAGCTATTCACTGTCCCTGTGCCCTTTCTGTTCTCTCTGAGCTGTTTGGATAAAATCTCTTTTATCTCGGCTGGTGCCAGTCTCTGATGCATAAACACTCCAGACTGACTCCTATTGCTTTGATAGAGGGAGAGAAAATGAAAGGAAGCAAAAACCGCATTAGCGCCTCAGCAGTAGGAACATCCCGTGTCCAGCCTGTCGTTCGGTTCATTTTACACGTCTTCATCTTTTCTCTTTACACTGTTCATTTCCTCCTTTAATGGCAGTAAAGTTGTGTTAATGTGGTTTAATAAACATTCACTGGATTTAGTTTATTGGAATTTTCTCTTAAGGaacctctttttttattattttcgaTTCTAATACATGTTAATATGTGTGTTGtaatcagtaaaaaataaataaataaataaataaataaataaaacggtccca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010928 lncRNA upstream 414367 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010735 lncRNA upstream 835336 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00009303 lncRNA upstream 1027403 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010927 lncRNA upstream 1149617 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 1195060 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010935 lncRNA downstream 44170 23649892 ~ 23651056 (+) True XLOC_004713
TCONS_00010736 lncRNA downstream 173230 23778952 ~ 23779177 (+) True XLOC_004716
TCONS_00010737 lncRNA downstream 206808 23812530 ~ 23859432 (+) False XLOC_004717
TCONS_00010738 lncRNA downstream 1338450 24944172 ~ 24944504 (+) True XLOC_004726
TCONS_00009368 lncRNA downstream 1467583 25073305 ~ 25075120 (+) False XLOC_004728
TCONS_00009334 mRNA upstream 24102 23424108 ~ 23430356 (+) True XLOC_004710
TCONS_00009333 mRNA upstream 38397 23371542 ~ 23416061 (+) True XLOC_004709
TCONS_00009331 mRNA upstream 520934 22921492 ~ 22933524 (+) True XLOC_004706
TCONS_00009329 mRNA upstream 538758 22870372 ~ 22915700 (+) False XLOC_004705
TCONS_00009337 mRNA downstream 58613 23664335 ~ 23674621 (+) True XLOC_004714
TCONS_00009338 mRNA downstream 157244 23762966 ~ 23796566 (+) False XLOC_004715
TCONS_00009339 mRNA downstream 157244 23762966 ~ 23796707 (+) True XLOC_004715
TCONS_00009340 mRNA downstream 206808 23812530 ~ 23932576 (+) False XLOC_004717
TCONS_00009342 mRNA downstream 244939 23850661 ~ 23870648 (+) False XLOC_004717
TCONS_00009332 other upstream 344181 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009330 other upstream 522437 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009319 other upstream 708675 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009313 other upstream 793078 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009307 other upstream 875928 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009341 other downstream 233077 23838799 ~ 23866353 (+) False XLOC_004717
TCONS_00009347 other downstream 305110 23910832 ~ 23910949 (+) True XLOC_004718
TCONS_00009349 other downstream 317603 23923325 ~ 23932015 (+) True XLOC_004717
TCONS_00009353 other downstream 608679 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009355 other downstream 736609 24342331 ~ 24345493 (+) False XLOC_004722

Expression Profile

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