RNA id: TU91609


Basic Information

Item Value
RNA id TU91609
length 469
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G73330
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 34780122 ~ 34780590 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccacaacactttcacccagttctcctctgaatcattcagatgttggcaaacatgtgctttcttgagcagggggaccttgcgtcgctgcaggatttcagtccttcacggcatagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagatcgagggagactgacagttattttgtgtttcttccatttggtcttgtagcccattagGTCTAcagtcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattaggagcactccctttaagagagtct

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91598 lncRNA downstream 176966 34569550 ~ 34603156 (-) True G73319
TU91588 lncRNA downstream 316797 34462489 ~ 34463325 (-) True G73309
TU91577 lncRNA downstream 417108 34362758 ~ 34363014 (-) True G73298
TU91575 lncRNA downstream 486582 34293273 ~ 34293540 (-) True G73296
TU91566 lncRNA downstream 583876 34195967 ~ 34196246 (-) True G73291
TU91614 lncRNA upstream 57043 34837633 ~ 34837943 (-) True G73335
TU91615 lncRNA upstream 84935 34865525 ~ 34865745 (-) True G73336
TU91651 lncRNA upstream 442938 35223528 ~ 35223860 (-) True G73365
TU91652 lncRNA upstream 453130 35233720 ~ 35234115 (-) True G73366
TU91659 lncRNA upstream 471304 35251894 ~ 35252734 (-) True G73373
AMCG00014828 mRNA downstream 214920 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 1345740 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014825 mRNA downstream 1660794 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014824 mRNA downstream 1973829 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014823 mRNA downstream 1986697 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014829 mRNA upstream 130003 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014830 mRNA upstream 162385 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014832 mRNA upstream 392279 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014839 mRNA upstream 801125 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014838 mRNA upstream 854397 35634987 ~ 35688097 (-) True AMCG00014838
TU91607 other downstream 10143 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 1973827 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2160973 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2165316 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 2516695 32263167 ~ 32263427 (-) True G73047
TU91914 other upstream 800036 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 1320768 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 1473184 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 1592561 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 2544430 37325020 ~ 37325307 (-) True G73833

Expression Profile