RNA id: TU91652


Basic Information

Item Value
RNA id TU91652
length 396
lncRNA type inter_gene
GC content 0.24
exon number 1
gene id G73366
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35233720 ~ 35234115 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtccaagatcttttaactattttatgaatgattgccttttaaaatgacttttaaaaatgaattttaactgtttttaaagatttagttgtttttaaaacactagttgtttggggttttttttggtttagttttgttctatttatttgtcaaatacattgaccgttttggattaattttaaatgcattggaccgttttggtttgttttaatttttttcctttttaattgtttctttattttgtccagtgcattttcagttattttcaatgtatttgacttttatgttggtagcagtttgctttaatcacgtttgttttgtttaagcacatgtttatttgagtttatttgttttattaatcactaagattttaaaatttttaagtgattttaagaattg

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91651 lncRNA downstream 9860 35223528 ~ 35223860 (-) True G73365
TU91615 lncRNA downstream 367975 34865525 ~ 34865745 (-) True G73336
TU91614 lncRNA downstream 395777 34837633 ~ 34837943 (-) True G73335
TU91609 lncRNA downstream 453130 34780122 ~ 34780590 (-) True G73330
TU91598 lncRNA downstream 630564 34569550 ~ 34603156 (-) True G73319
TU91659 lncRNA upstream 17779 35251894 ~ 35252734 (-) True G73373
TU91665 lncRNA upstream 23351 35257466 ~ 35258943 (-) True G73378
TU91668 lncRNA upstream 33637 35267752 ~ 35268117 (-) True G73381
TU91674 lncRNA upstream 39495 35273610 ~ 35274738 (-) True G73385
TU91844 lncRNA upstream 41621 35275736 ~ 35360377 (-) True G73533
AMCG00014832 mRNA downstream 53081 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014830 mRNA downstream 273471 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014829 mRNA downstream 302074 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014828 mRNA downstream 668518 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 1799338 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014839 mRNA upstream 347600 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014838 mRNA upstream 400872 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014841 mRNA upstream 508419 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014842 mRNA upstream 558233 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014840 mRNA upstream 744091 35978206 ~ 35986568 (-) True AMCG00014840
TU91607 other downstream 463741 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2427425 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2614571 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2618914 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 2970293 32263167 ~ 32263427 (-) True G73047
TU91914 other upstream 346511 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 867243 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 1019659 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 1139036 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 2090905 37325020 ~ 37325307 (-) True G73833

Expression Profile