RNA id: TU91668


Basic Information

Item Value
RNA id TU91668
length 366
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G73381
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35267752 ~ 35268117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccaaaacacacagccagggcAACAAAGGAGTTATTCAAGAAGAAGCAcgttaaggtcctggagtggactagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctccagagatgtgtgcaaacctggtggccaactacaagaaacatctgacctctgtgattgccaacaagggttttgccaccaagtactaagttgaaggggtcaaatacttatttccctcattaacatgcaaatcaacttataacttttttgaaatgcatttttctggatt

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91665 lncRNA downstream 8809 35257466 ~ 35258943 (-) True G73378
TU91659 lncRNA downstream 15018 35251894 ~ 35252734 (-) True G73373
TU91652 lncRNA downstream 33637 35233720 ~ 35234115 (-) True G73366
TU91651 lncRNA downstream 43892 35223528 ~ 35223860 (-) True G73365
TU91615 lncRNA downstream 402007 34865525 ~ 34865745 (-) True G73336
TU91674 lncRNA upstream 5493 35273610 ~ 35274738 (-) True G73385
TU91844 lncRNA upstream 7619 35275736 ~ 35360377 (-) True G73533
TU91845 lncRNA upstream 7619 35275736 ~ 35360377 (-) False G73533
TU91864 lncRNA upstream 72556 35340673 ~ 35423135 (-) True G73548
TU91882 lncRNA upstream 123067 35391184 ~ 35464665 (-) True G73562
AMCG00014832 mRNA downstream 87113 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014830 mRNA downstream 307503 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014829 mRNA downstream 336106 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014828 mRNA downstream 702550 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 1833370 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014839 mRNA upstream 313598 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014838 mRNA upstream 366870 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014841 mRNA upstream 474417 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014842 mRNA upstream 524231 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014840 mRNA upstream 710089 35978206 ~ 35986568 (-) True AMCG00014840
TU91607 other downstream 497773 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2461457 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2648603 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2652946 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 3004325 32263167 ~ 32263427 (-) True G73047
TU91914 other upstream 312509 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 833241 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 985657 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 1105034 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 2056903 37325020 ~ 37325307 (-) True G73833

Expression Profile