RNA id: TU91882


Basic Information

Item Value
RNA id TU91882
length 3823
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G73562
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35391184 ~ 35464665 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttattatttttaggattTATCTGATGTCATTTACTAAGAGTAGTTTGTACAATTTGTATAACTTAGGTGTCTCTAGGCCTGGTCCTATAAAGCCTCAAACTAGGAGAGTTTGTAGATTCCCCTTAATTACTTAAAGTCTGATATATTAAACAggtgttttataaaataatttgaaactaaaaacagaatatCATTCCTATTTCATTGGTTTCTCTGACTGCAACACTGAAAATATCTTGacattactaaaaaaaaatattggtgCACCTTTTTGACTGACTGCAGAACTGGGTTAATAACATACAACATGTGCCCATAAAATGAAAGGTGGAGAGGTTGAATGATTTCGTCATATTCATGTGGAAGGTAAATTTAATTTTCAGTGCACACTGCTAGGTCAGTTCTAAAGAGACTGGacacaatttttaatttttgattgAAAGTAATGTTTCaacatgtttacaaaataaaggCAAGTAGGTCAAGATAACAGAATCTGTACCGTCATCTGTAGTCTGGCGACACAGAACTGGAGTAAACGGGCTTTTCTTCTCATAGTATGCACTGAGGGCCTGGACTCTGACACAATACACTGTCCAGGGTTTAAGCTTGCTTAAAgttatcacattattttctgaCTCAATCGCCTTGCAATTTTCAGatttctgaaaggaaaaaaaaaaaacaaattccatttAAGAAAAGATGGACAAGATCATTTATATCTAAAACTTGGCAAATACTCAAACcactgaagaaaaacatatgattgaaaatatttaaaactaataGGAGAACACTACATTACatgcaataaaaacagactGAGACAGGAACCAATTGGCTTAATTAAgaattttttttacattattattaatttcatacatAAACAGCATTTTAACCTGCAATCTTTTACAATAATTTCTAAATTCTATGCTTCCCaatcacaagaaaaataaacataaataagatACTGATCTGATATTGCattcttaatatttattttaagctaaGACTTTACAAAAGCATGTTATTTTGAGaaagaggatactacccaaagcaGGGTGGGACAATATTGTTAGCATGGGAACTCAGTGAACACATTTgtctagaacataagaacataagaaagtttacaaacgggaggaggccattcgacccatcgtgctcgttttgtgtccattaataatggagtgatccaaggatcctatcctattttgaaatgttcccaaactttcagcatctaccacattgctggggagtttgttccagattgtgacgactctctgtgtgaagaagtgtctcctgttttccgttttgaatgccttgaagcccaatttccattcgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgtccttcatgattttgaagacctggatcgagtccccacatagtctcctaagttccagggtgaaaaggttcagttccctcagtctctccaagtaggacattcccaaAAGTAGAAACcaggacacattgaaacaatatataaaacaaattacatcactNNNNNNNNNNNNNNgtttattttgtttattctgaGTGTGGTGTGGACAGGAAAAGTCAATCAtttagtcaagtagattgtgtaaattagctagctagataggtcttatacattttgcatttcgATATTGTgactggaaaacattgccacaaggaagctaatgctaatgctaatgcattttcattgcagctcacattgctaaactggcaattgaatgaaaatgtattaaaaaatgaaaaagaaaaacatattgttcggtcaattacagctgtaattgcaaaatattcctttataaaacaaatagtcacaacctttatagttaatttgaaattgtaacaaTAAAAAGTCGTGATAATGTCgggacaataatacaagagtctgacacgACATGcttgagagttgacaggtctgctgttattatgccatttccatatgtcttctaataatgtatttttacattgaaatttatttaacaaagttgttgtgttagataagtattcatcaattgcatcaattacaacgtattaatttgtgtttaaatgatttgcgatagagacatgcattttttgctgcgtagcggagattctgctgaagagaaacgtgcGGTTTGTTTAAATCGCGTCTTTGCTGGCGTGCATGGTATTTACCAGTGGAAAGGATGTTACTatctgtcatcattcctagagattatatatttttttacccaaccacagaccgtgactctatgaatatctagccaatccaatgaaatccttttaatgacgtgcagagacccagagaagggagtagcactgaagaggaagaggagtatgaagagcaataatgtgtcaccatataaaaCCCCTTTTCATGTGctagtttagtgtgtttatactgatctccattagctgccatgttatttcatatgtgattgattaatttgaaaacgatgctcccgcctctactagcaagtgttataattcaacagaatgcagtgttttggtcaaagaccttataacacttgcaagtagaaactgtgtgggagcatgttttttctatccagatccttttccctcatacacacctgcaattagcttttgttatagtgatttgattaattacctgaataattgccatgttttaacatgttcaccacacacttatgcaccctcatgcatttttggtgatgtttgcctttggctggtaaaaataccaagtggctggtaagttttttccttctaccagacacagtggctagtggccgaaaaagttaattttatcccaaTTCCGATCCTAGGTGCTTGTCTTACTTGTCTTACTACTTTTCATAAAGAAGAACCAGCCACTTTTCCTGAAGAAGTAGGCCAAGTAGGCTTATGTCTAGGACGATTATTAATTTGTTGTGGGTTCATCCACTTTTTAATGGACTTTTGTTGTCGGCCAAGAATGTTCATTTCGGTGCATCCCTAATTCCAATTACAGTGTTCCTGAGATATTGTTTTCAGAGGTGACTGCAGGATGTTACAACAATACTGAATTTCTTTCCTACAAATGGATAGTTAAAGATAGTTACTGTTCAATTCCAATGAGAAACGTGGACTCTGCACCCACGGGGATGTGAAAATCCCCTGCTCTGCTCTCACTTTGAAATTGTATTGACCGAAAACTGACAACAGCTTTGTGAGGTCACACTTTCTCTCTGTAATCCCCTGGCATGCAGTCTCTTCCACAACTTCTCCAGTTGTATATGAATGTTGCAGTATAGGTGACATTGGTTGCAGAAGCCTCATAGTCCCATTGTAGTGTGGCTCCAAGGTTTATTGAATGCACTCTTACATTTCTTGGAGGAGGTAAAGATGCAAGCACCactggaaatataaatatgatctctgaatacaaaatgtaagcaacacaatgcaatgatAATTCAGCTGCCATAGTagatgaacaaaaaaaaaatagtttcccATATTTTTTGGCATTGCTTTGGCATACCAAGCATTTTTCACACAGATTCTCTataactgtaatttaaattacatttacatctaTGCTCTATTATGTTCTGCAGAAAACTAACATTTCTAGAGATTGTCTAGAAGCACACATCTTTATTAACTGACACAGTGAAATTTCGAGACACAGGGaaagttatattattttctatagGTACCGGTAACCCACAGTCTGTAATGTagctgatttaaatatacgatgTAACGCAAACTACCTAGTCAGTAAGAAGATACAATTTCCCAGCACTGATGAAGTGATACAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91844 lncRNA downstream 30807 35275736 ~ 35360377 (-) True G73533
TU91845 lncRNA downstream 30807 35275736 ~ 35360377 (-) False G73533
TU91674 lncRNA downstream 116446 35273610 ~ 35274738 (-) True G73385
TU91668 lncRNA downstream 123067 35267752 ~ 35268117 (-) True G73381
TU91665 lncRNA downstream 132241 35257466 ~ 35258943 (-) True G73378
TU91945 lncRNA upstream 591331 36055996 ~ 36057458 (-) True G73606
TU91948 lncRNA upstream 729383 36194048 ~ 36194250 (-) True G73609
TU92025 lncRNA upstream 1009578 36474243 ~ 36475948 (-) True G73667
TU92063 lncRNA upstream 1181394 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 1224692 36689357 ~ 36730561 (-) True G73722
AMCG00014832 mRNA downstream 210545 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014830 mRNA downstream 430935 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014829 mRNA downstream 459538 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014828 mRNA downstream 825982 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014826 mRNA downstream 1956802 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014839 mRNA upstream 117050 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014838 mRNA upstream 170322 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014841 mRNA upstream 277869 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014842 mRNA upstream 327683 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014840 mRNA upstream 513541 35978206 ~ 35986568 (-) True AMCG00014840
TU91607 other downstream 621205 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2584889 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 2772035 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 2776378 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 3127757 32263167 ~ 32263427 (-) True G73047
TU91914 other upstream 115961 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 636693 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 789109 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 908486 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 1860355 37325020 ~ 37325307 (-) True G73833

Expression Profile