RNA id: TU91945


Basic Information

Item Value
RNA id TU91945
length 1053
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G73606
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36055996 ~ 36057458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tagtcaccaagaaaacaattggtaacacactacgctgTAAAGGACTGAAATCCTCATTTTAGAGTACTATAAAGTAAGTTAAACTTCAACTAGTAAGACTGAAAGTCTTCATTAGGCAACCAAGAGTGAAAAGGTGCTGTCTTTCTTCTGCTCATCTTGATCTTGTACAAACACACCACAGAATAGAGATAATTTATTAGATGAAGAAAGTCACTCAACAGTCAAATTAATTGTCttgatgtttaataaaatgtttaataaaaacatttcaaagcagagcaaaaaacactggccattAAGCAAATGGGTACatcaaaatacagcaacaagATATGGACCATATGGAAAACTATCATACCTGCCATAGTAACACAAATacccaaacaaaacatgaaatggagacaacAGAACCTTGTGGACACATGTGTATTTCAGCATTGATAGAAAAAGGGGCAAAAAAAAAGTGGGTCTCCCAAGTCGTGGATCCAGTTGGATTAATtcttacaatttatttaaaactgagcTCTTGGCATTTAGGGCTTGAATTAATTGTGATAATTCATCAGCTTGTGTGTATTCCTGAAGTGGTTTGCttgtgtactatattggttcGCAGTTTTGCTTTGAAATAACTAATACTTGTCaaagtgtcattttaatttcaaacccCTTTTTTGACAACGTCCTTGAATCCATGTTCAGGAATGTTAATAATTGGGAGCATGCGAGCACATATAGGCAATTTAGCTCAAGGTAATGACTTTTCTACTGGTTTTACCAGTGGTGATTTCAGATGGGTGCCCCCTTCCCCACCTCTGTAACTATGTTTGTCCTTAATGGTTGAACAGTGAACCAGTCTTtgctttgatcttttttttttttttttttttcttaattgaagaaaagtatttgattgcTTGGTAAAGTTTTTAGTGAGTCGGTTTTTGAGTCTGAATATTTTATAACGTTACAATGAAGATTGTAGTGTACAAatctacatttatataatatgtatggtatgatgcaataaacaaaaataattattatattacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91890 lncRNA downstream 213005 35434969 ~ 35842991 (-) True G73568
TU91882 lncRNA downstream 591331 35391184 ~ 35464665 (-) True G73562
TU91864 lncRNA downstream 632861 35340673 ~ 35423135 (-) True G73548
TU91844 lncRNA downstream 695619 35275736 ~ 35360377 (-) True G73533
TU91845 lncRNA downstream 695619 35275736 ~ 35360377 (-) False G73533
TU91948 lncRNA upstream 136590 36194048 ~ 36194250 (-) True G73609
TU92025 lncRNA upstream 416785 36474243 ~ 36475948 (-) True G73667
TU92063 lncRNA upstream 588601 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 631899 36689357 ~ 36730561 (-) True G73722
TU92141 lncRNA upstream 958492 37015950 ~ 37016173 (-) True G73776
AMCG00014840 mRNA downstream 69428 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014842 mRNA downstream 241558 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014841 mRNA downstream 288606 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014838 mRNA downstream 367899 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014839 mRNA downstream 463540 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014843 mRNA upstream 5161 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014844 mRNA upstream 116387 36173845 ~ 36332481 (-) True AMCG00014844
AMCG00014845 mRNA upstream 316079 36373537 ~ 36390780 (-) False AMCG00014845
AMCG00014847 mRNA upstream 406996 36464454 ~ 36526810 (-) True AMCG00014847
AMCG00014846 mRNA upstream 482360 36539818 ~ 36570308 (-) True AMCG00014846
TU91914 other downstream 447319 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 1286017 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 3249701 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 3436847 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 3441190 32597462 ~ 32614806 (-) True G73127
TU91940 other upstream 43900 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 196316 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 315693 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 1267562 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 1721875 37779333 ~ 37783575 (-) True G73916

Expression Profile