RNA id: TU92063


Basic Information

Item Value
RNA id TU92063
length 1165
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G73704
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36646059 ~ 36652043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtagctcgtctgttggatcggaccacacgggccagccttcactccccatgtgcatcaatgagccttggccacccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctcgtctcatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattgtcagtgttattcacttcacctgtcagtggtcataatgttatggttgatcagTGTATcgtaataacaataacaaaaataataaatagcaaatatttattttattgttgcacatggaaacgttgtCTTATGGTAACATAATgcatgtctgaatataatgttgtctatacaggtttagctcttcctaatatctcttaacagaaacgtgtatttattacgctgtcttcaataatgtaaagcataaagaataaaatagacacaaaagtcctttccacatcaggctctatcactcgtagtgttttctgtgtttgattttaaaacgaaacacaaaccaaacccacaatcgctctgctcctcccacaacagggacgGACTTGttacaatggcctggttttacaaaaaagctctgggacgcgtccaGCACGGCATGGCATGGTACGGATGCCtaagccagtggaactgagGCATTAATTGCCCTAGTACATTTAAGACATGGAACGCCCTTCTAATCCACTTGAGTAGAATCCATACAACTCAAACTTCACAAAAGCCCAGGGAATACTCTACATTCAGCTGTCATCTGTGTGCTTGTAGTGACCTTGCCACATAGTGGGATTATGTTGGCCATATCAATGCACATCTGAAGAACAATTCAGCTGTCAGTTGTATATTTCTGGGTTGTAGTTTTCAAACTAATATCTATGGAATATCTATGGTCTTTGGTGAACTTCAAATGggcagcaatgttttttttagagagcagtgatttgtctttttctgaTAGTGGAGTCATGAACATTCATATTAGCCAAGGTGAACTCACAAAAACCTAAGTCACCCCTGAATATCTACCAAATAATTTAAACaccagattaaatacaattgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92025 lncRNA downstream 170111 36474243 ~ 36475948 (-) True G73667
TU91948 lncRNA downstream 451809 36194048 ~ 36194250 (-) True G73609
TU91945 lncRNA downstream 588601 36055996 ~ 36057458 (-) True G73606
TU91890 lncRNA downstream 803068 35434969 ~ 35842991 (-) True G73568
TU91882 lncRNA downstream 1181394 35391184 ~ 35464665 (-) True G73562
TU92083 lncRNA upstream 37314 36689357 ~ 36730561 (-) True G73722
TU92141 lncRNA upstream 363907 37015950 ~ 37016173 (-) True G73776
TU92178 lncRNA upstream 520887 37172930 ~ 37173171 (-) True G73803
TU92228 lncRNA upstream 866000 37518043 ~ 37518331 (-) True G73851
TU92230 lncRNA upstream 879427 37531470 ~ 37531976 (-) True G73853
AMCG00014846 mRNA downstream 75751 36539818 ~ 36570308 (-) True AMCG00014846
AMCG00014847 mRNA downstream 119249 36464454 ~ 36526810 (-) True AMCG00014847
AMCG00014845 mRNA downstream 255279 36373537 ~ 36390780 (-) False AMCG00014845
AMCG00014844 mRNA downstream 313578 36173845 ~ 36332481 (-) True AMCG00014844
AMCG00014843 mRNA downstream 572751 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014849 mRNA upstream 151189 36803232 ~ 36804839 (-) True AMCG00014849
AMCG00014851 mRNA upstream 278964 36931007 ~ 36944739 (-) True AMCG00014851
AMCG00014855 mRNA upstream 392167 37044210 ~ 37047479 (-) True AMCG00014855
AMCG00014856 mRNA upstream 416828 37068871 ~ 37073768 (-) True AMCG00014856
AMCG00014854 mRNA upstream 428114 37080157 ~ 37115666 (-) True AMCG00014854
TU92007 other downstream 252566 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 391872 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 463708 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 1037382 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 1876080 34769583 ~ 34769979 (-) True G73328
TU92209 other upstream 672977 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 1127290 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 1691279 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 1760117 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 1780220 38432263 ~ 38432875 (-) True G74115

Expression Profile