RNA id: TU92111



Basic Information


Item Value
RNA id TU92111
length 301
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G73748
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36838829 ~ 36941821 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aatctcagctcattacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtacaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctataagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcaattatttacaaaaggaagaaacacaaaataactgtcagtctcccttgatctgggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92102 lncRNA upstream 66088 36772485 ~ 36772741 (+) True G73739
TU92048 lncRNA upstream 149764 36654955 ~ 36689065 (+) True G73689
TU91990 lncRNA upstream 338699 36490183 ~ 36500130 (+) True G73641
TU91986 lncRNA upstream 360879 36476608 ~ 36477950 (+) True G73638
TU91960 lncRNA upstream 489773 36304584 ~ 36349056 (+) False G73619
TU92162 lncRNA downstream 219167 37160988 ~ 37163326 (+) True G73791
TU92177 lncRNA downstream 231110 37172931 ~ 37173176 (+) True G73802
TU92181 lncRNA downstream 301414 37243235 ~ 37243446 (+) True G73806
TU92204 lncRNA downstream 355856 37297677 ~ 37298128 (+) True G73828
TU92205 lncRNA downstream 357564 37299385 ~ 37299598 (+) True G73829
AMCG00014850 mRNA upstream 105576 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 541106 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014837 mRNA upstream 1287022 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014834 mRNA upstream 1364460 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014836 mRNA upstream 1426757 35394310 ~ 35412072 (+) False AMCG00014836
AMCG00014853 mRNA downstream 58809 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014862 mRNA downstream 754839 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014864 mRNA downstream 811974 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 813038 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 959976 37901797 ~ 37904976 (+) True AMCG00014870
TU91690 other upstream 1444180 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 1878382 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2058239 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 2599429 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 3472729 33364755 ~ 33366100 (+) True G73244
TU92227 other downstream 576287 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 1490553 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1868872 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 2394447 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 2665066 39606887 ~ 39621186 (+) True AMCG00014913

Expression Profile