RNA id: TU92214



Basic Information


Item Value
RNA id TU92214
length 341
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G73838
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37376275 ~ 37376615 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtaacaacacctgcacaggattggcacatccgaatatcacacttGTGGGACAGGTTCAGGATGGCAaaaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgttCAGGCTGTCcacaataggctgagagaggctggactgagggcttgtagcctgttgtaaggcaggtccttaccagacatcacctgggcacaaacccaccttcgctggacgtgatttcctgcaagacaggaatgtcagtgttctgccatggccagcaaagagcccggatctcaatcccattgagcacgtctgggacctgttggatcgaagggtgagggctagggcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92208 lncRNA upstream 50951 37325022 ~ 37325324 (+) True G73832
TU92205 lncRNA upstream 76677 37299385 ~ 37299598 (+) True G73829
TU92204 lncRNA upstream 78147 37297677 ~ 37298128 (+) True G73828
TU92181 lncRNA upstream 132829 37243235 ~ 37243446 (+) True G73806
TU92177 lncRNA upstream 203099 37172931 ~ 37173176 (+) True G73802
TU92225 lncRNA downstream 135221 37511836 ~ 37512309 (+) True G73848
TU92229 lncRNA downstream 155001 37531616 ~ 37532213 (+) True G73852
TU92249 lncRNA downstream 222113 37598728 ~ 37602411 (+) True G73872
TU92250 lncRNA downstream 222142 37598757 ~ 37602411 (+) False G73872
TU92270 lncRNA downstream 270988 37647603 ~ 37647880 (+) True G73890
AMCG00014853 mRNA upstream 346213 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014852 mRNA upstream 461772 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014850 mRNA upstream 643022 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 1078552 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014837 mRNA upstream 1824468 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014862 mRNA downstream 320045 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014864 mRNA downstream 377180 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 378244 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 525182 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 558976 37935591 ~ 37944752 (+) True AMCG00014867
TU91690 other upstream 1981626 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2415828 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2595685 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3136875 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 4010175 33364755 ~ 33366100 (+) True G73244
TU92227 other downstream 141493 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 1055759 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1434078 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1959653 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 2230272 39606887 ~ 39621186 (+) True AMCG00014913

Expression Profile