RNA id: TU92229



Basic Information


Item Value
RNA id TU92229
length 598
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G73852
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37531616 ~ 37532213 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctccaagactctcgagtgggcagtccaccatcagctctcggactttctgtcccaacactcactccttgatcctctgcaatccggcttccgcacagctcactccactgaaacggctctcctggctgtcactgactccctcagccgcgctcgggcagcctccctctcctcagtcctcatcctccttgacctctctgcagcatttgacaccgtcgatcactccatcctcctctcctgcctcgctgaccttgggatctctgggactgctctcacctggttctcctcctacctcagtgaccggtcctaccaagtgacatggcgaggctcctcatccaccccccaacctctcctcacaggtgttccccaaggctccgtcctgggcctgctcctgttctctctctacactcgctccctgggccccctcatctcttcccatggcttctcctaccacttctacgctgatgatgccaagatcttcctgtcttttccctcttctgaccctctcatcccctcacgcatctcttcctgcttgtctgccatttccgcctggatgcactcgcaccacctcaagctcaacctctccaaatcagatctcctcttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92225 lncRNA upstream 19307 37511836 ~ 37512309 (+) True G73848
TU92214 lncRNA upstream 155001 37376275 ~ 37376615 (+) True G73838
TU92208 lncRNA upstream 206292 37325022 ~ 37325324 (+) True G73832
TU92205 lncRNA upstream 232018 37299385 ~ 37299598 (+) True G73829
TU92204 lncRNA upstream 233488 37297677 ~ 37298128 (+) True G73828
TU92249 lncRNA downstream 66515 37598728 ~ 37602411 (+) True G73872
TU92250 lncRNA downstream 66544 37598757 ~ 37602411 (+) False G73872
TU92270 lncRNA downstream 115390 37647603 ~ 37647880 (+) True G73890
TU92275 lncRNA downstream 149154 37681367 ~ 37681639 (+) True G73895
TU92276 lncRNA downstream 151102 37683315 ~ 37683542 (+) True G73896
AMCG00014853 mRNA upstream 501554 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014852 mRNA upstream 617113 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014850 mRNA upstream 798363 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 1233893 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014837 mRNA upstream 1979809 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014862 mRNA downstream 164447 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014864 mRNA downstream 221582 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 222646 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 369584 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 403378 37935591 ~ 37944752 (+) True AMCG00014867
TU92227 other upstream 13210 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2136967 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2571169 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2751026 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3292216 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 900161 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1278480 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1804055 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 2074674 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 2332869 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile