RNA id: TU92234


Basic Information

Item Value
RNA id TU92234
length 403
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G73857
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37573738 ~ 37574140 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acggcttctgcagggtgacgggggccgctgtcaatagggccaagagcgaggtctacctctccagggcatggcctgtcggccggggcccgccgaccgtgttccctgtgaagccgtccatcaaggttctggggatcacgatcgacaggaccaacacgggcacccggagctgggaggaggcTTTATCTAAAGTCCAAAgaaagatccacggctggagcacaaggaccttgacgatggctggtaaggtgctggtcgtaaaggccatcctcttcccgatacttcTCTACGTAGGtatgatcttccccccagacaaaGTCATCGCAAAACTAGTGAcaagaattatatttcggtttgtctgggggagcaaaatggagaggctgaaaagagtgcagatggtgaaggatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92230 lncRNA downstream 41762 37531470 ~ 37531976 (-) True G73853
TU92228 lncRNA downstream 55407 37518043 ~ 37518331 (-) True G73851
TU92178 lncRNA downstream 400567 37172930 ~ 37173171 (-) True G73803
TU92141 lncRNA downstream 557565 37015950 ~ 37016173 (-) True G73776
TU92083 lncRNA downstream 843177 36689357 ~ 36730561 (-) True G73722
TU92243 lncRNA upstream 7626 37581766 ~ 37582162 (-) True G73866
TU92288 lncRNA upstream 109099 37683239 ~ 37683542 (-) True G73908
TU92291 lncRNA upstream 129706 37703846 ~ 37704048 (-) True G73911
TU92297 lncRNA upstream 205193 37779333 ~ 37783575 (-) False G73916
TU92299 lncRNA upstream 252339 37826479 ~ 37826702 (-) True G73918
AMCG00014861 mRNA downstream 15529 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014859 mRNA downstream 152571 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014857 mRNA downstream 214029 37323742 ~ 37359709 (-) True AMCG00014857
AMCG00014858 mRNA downstream 263921 37302224 ~ 37309817 (-) True AMCG00014858
AMCG00014854 mRNA downstream 458072 37080157 ~ 37115666 (-) True AMCG00014854
AMCG00014860 mRNA upstream 28332 37602472 ~ 37616362 (-) True AMCG00014860
AMCG00014865 mRNA upstream 227954 37802094 ~ 37864483 (-) True AMCG00014865
AMCG00014866 mRNA upstream 297266 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014871 mRNA upstream 371007 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014875 mRNA upstream 463223 38037363 ~ 38040051 (-) True AMCG00014875
TU92209 other downstream 248431 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1180245 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1319551 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1391387 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 1965061 35580626 ~ 35608677 (-) True AMCG00014839
TU92296 other upstream 205193 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 769182 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 838020 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 858123 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 916183 38490323 ~ 38490940 (-) False AMCG00014891

Expression Profile