RNA id: TU92249


Basic Information

Item Value
RNA id TU92249
length 3684
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G73872
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37598728 ~ 37602411 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTattcaaaatgattttattttaaaagacagcaAATCCAAAAGgaatctttgtttctttgtgacATAAGTTAAATGTAATAACTGCTAagcaagcaataataataacaataataacataacaATACTAGCCCCATAATACAGTTTTAGCCTGTGAGTACTTAAATTGTGGGGGAgagtgtgcatttgtgtgtgtgtgcgcatgtgagTAACTCTttcggtgtgtgtgtttgactaagtgtgtgtgtgtctgtattggtGAGTAGTCCCTTCTCAACAGAAAGACACTGATTTCCAActgcaaaataaagtttaaagaaagatacaaaattacattgaaCAAATATAAGCCTATTTATGACTATTTCTGATGTCAAAATCAACACCAATGAGGAAAACTGACCCCCACAAAGATGGCCGACCCGGTGTGGGAGAGACGAAAGTGCTGACATATGAAAACAGTGCAGTGTCTCCCTTCagctgagtttgtgtttaaggGGATCAGAGCTTCAACATAGTGAGTCAATATAGTACaatgcaacacaatacaataaactaTAGActacagtaaagtgcagtacaatattatataatacactatagtacagtgcagtgcagtgcagtactaTACAATACTGCACTCTACACTACACTAGTACTGTACAACTCATTACAGTACAGTCCCATACAATGTAACACTATATTATAATGCAGTACactagtgcagtacagtaccaTACAATATATTACCACACTATAGAATATAGTGCAGTCCAATATACTAGTGATGGCAAGAGCTGCTGTGTTTAATAGTGGAGCTGTGAGTCTGGCCTCGGAGAGCAGTGTCAGTGGAGTCCAGTCTGTACTGAACACTATGGGTCAGTACatgagggagggaaggagaaagagggtgagagaaaaagagagagggagggagggaagaagagaggcagagagagtgagagacaagGAAAGACAGCATGAGACggatagagagagaggcaagaccttaacatttattttgtacaacttGAAATTCTCTCTTAAGACCATGTACCTGAACGCTAATGACATATGcttctgtaacacacacacagtacctATGAGAGCCCAAGGCCACCTATATACACAGACCTcagagaaaaatatacaatagtGCAACATTATCTGTACAATCATCCTTATTGCAGCGACCACAGCACCCCTCCTCCGccaaacacacagagatgtaCAGAGACTGATACACAGCTTCTCACTGAATATCCTTTCAttactgacacacagacaaagaaacagaaagaacgacaaagacagagacacacagacacagaaccAAAGGCAGACAGAGGGAGACGCACAAAGATGCAGACTTACATGGCAATGGAGACAGACATTTAGAGAAACAGActcagacatacagacacactttTTCTGCCTAGACTAACACTATCCTACAAAAATACCCTTTCAGTaacgaaacacaaacacacactccctGCTTACAGTAACAAACACTCTTTTATTTGTGCATataactgttattatttttagattggTTCTTTTAAAAACGGGTCAAATGGCAAAAAACTAATGGCCCACGAGTCGGACCTGGCCCCCCAGTCTGCCACGTGTAGTAATTTGTACAACTatatacagctttggaaaaaattaaattaattttttccagatctgtatatattatatcaaAATGTTAAGCTTATACCTATATTCAACATGAAACTGAAACAGTGGATTTGGCATCCcccaaacacaaaaaacaaaatcagctttTTGGAGTCTCTGTGAACTTGATGCACTAAGCATAATTCTACCCAATTGCAATGCTATCTGATCTTGTCCCATAATGGGGGGGGTCTTTTGTTGAAATTGTAccaaacaaattataaacaaacgagagaggaaaaaaataggcCAGAATCCATGCATTCGGATTTCTATCAAATTTGCGCAAGCTAGCAGGCTACTTGTAGCCACATACACAACTACGGattcttgttttttcaatttttattttatattttgaagtgAGTTACAAGTATAAGAATTatactattaaaaatataagaaaaggAAGGTCAATAAGGAGTGTAGAGTTATCCaagaaaaaatctgaaattaatatttctCTGTGGAGGTTCATGGAAAGACAACATGCTGGACCTGCACAGCAAACCACTGTCCCCAAAGAGTACAACATCCAGAGCAGGGCTTAATTGTTGCCCGAGCTCACCTCGCCTCAATTTGAGACTGTCCGCGCTCCGGGACCTCAATGCACAGCTTTGGCACCTCCTTGTGACATAAAGAAATGGAACATGcgcatttacaatttaaaaataatttaaaacacaagtcACTGATCTATCTCGTAGactctaaaaaataaaacgttacGCCAACGCGGAAAGTTAatcactgtactgatttacAGAGGGGTTAAGTCACTTGTAACAAGCTTATATATCTGATGAGCCCTGTAACACTCCCCCCCCCTTCAGTGATGTCtcaaaaatgcattgaaagtGCGTTACATTGATGTTAAACTTTATGCGCATGTTGTCACACAAACGCTTTGGTACCTCTGCTCCCCCTTGTACATCTGCTCTGTCCCATTCACATCACGCTCCGGCACCTcgtgatttacaaattaagcactggtCCAGGGCATTATGACTCCAATCTTgccaacaaatacaacaaatactCCGGGGAGATGCGTATGACTGAAAAGCATTGAAAAAGCAGCAGTCCCTCCTCAAAAAGGTCCATCTAGTGAGACGACAGTCACAGCTGGCTATATCGATGCACATGGACTTGCTTGTCATCAAAACCTTTTCGGATGGGACATGTCCAGAAAAGCGACAGGCCTTTGCTAATATTAACCTCAGTCAGCCTCAGTGATATATATCGGAGAATCTAATATTAGCCACAACTTTCTGAGAATAATACTGCACACTTTCCAACATTAAAATCATGGTAAGCAGAAGCGGAAGAGTGCCGTGATGCAATGGGAATCCAACTTTTGGAAGGAATTCCAAGAAAGGTTTTCAGACTTAAAAGCCTTGAGAAAGATTTTGCGATATTTCATAATCCATTTTCTATCAGTGTGCCTGAGATCTCAGAAGGGCTTCAGATGGAAGTAATCAACTTGCAGTGTGAGACTCCTTTGTAGGAGAAATTCTCCAGTGCTGATGTGGAAGCATTCAATCAGTATGTAGGATCAAATTACCCCAAGCTGAAGTGTTTTGCAGTAAAAATATTGTCCATATTTGGCACAACGTACGTGTGAGAACAGCTGTTCTCCGtcacaaacatgaataaatcaaGAATGCGTTCACAACTTAACGACGCACACTTGAACTCTCTACTAAAGGTAACAACAGCCCAGTGACTTGTTCCAAAATTCGAGGCAGTAGACCAAACAGAGGGGTGTCCGGCGTCAGGAAGCAAGCAGCCACAGCACTGAGTGAGTAGCTATACATATCACTTTAATCATTCATGCATTTTGATATTATGTGTTTTGTTCACAAAAATTTTGCCACAATTTTTAAACAGCCAATGGCCCGTAGGAGGTGCATTTGTATCCAAACCGGCCCGCTAATTGAATTCGACTCTcctattttaaagcaaatccaCATCATGTCCTATATCAGTGCAATGTGTCTGA

Function

GO:

id name namespace
GO:0031399 regulation of protein modification process biological_process
GO:0031400 negative regulation of protein modification process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92229 lncRNA upstream 66515 37531616 ~ 37532213 (+) True G73852
TU92225 lncRNA upstream 86419 37511836 ~ 37512309 (+) True G73848
TU92214 lncRNA upstream 222113 37376275 ~ 37376615 (+) True G73838
TU92208 lncRNA upstream 273404 37325022 ~ 37325324 (+) True G73832
TU92205 lncRNA upstream 299130 37299385 ~ 37299598 (+) True G73829
TU92270 lncRNA downstream 45192 37647603 ~ 37647880 (+) True G73890
TU92275 lncRNA downstream 78956 37681367 ~ 37681639 (+) True G73895
TU92276 lncRNA downstream 80904 37683315 ~ 37683542 (+) True G73896
TU92268 lncRNA downstream 104089 37706500 ~ 37708190 (+) True G73888
TU92269 lncRNA downstream 105875 37708286 ~ 37708801 (+) True G73889
AMCG00014853 mRNA upstream 568666 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014852 mRNA upstream 684225 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014850 mRNA upstream 865475 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 1301005 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014837 mRNA upstream 2046921 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014862 mRNA downstream 94249 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014864 mRNA downstream 151384 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 152448 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 299386 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 333180 37935591 ~ 37944752 (+) True AMCG00014867
TU92227 other upstream 80322 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2204079 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2638281 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2818138 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3359328 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 829963 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1208282 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1733857 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 2004476 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 2262671 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile