RNA id: TU92268


Basic Information

Item Value
RNA id TU92268
length 1691
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G73888
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37706500 ~ 37708190 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGTAACTGATTTATTCTACTGGGGAAAGACTGGTAGCTTTGAAGAGCAGAAACGAAAAAGACAGAAACTGCACTAAAACACAGGAAATTCACCAAATTTAACtgggaaacaaaaatatatttctctgtgAAGGAATTACAGTGCCCAATGAACTACAAAGTCCCATCAGTCACTGCAGTAGAGCATACATGCTCCCTTGCTGCTGGAGTGATTGGAGGCTGGAGCACTGCAACCCTCATAAAAATGGTCCCCTACTTTTCTTGGGGAGTGTGAACCAATAAGGGGAGAGCACAAAGGGCCTCCCACTGGATTTCTTTGGACTGCAGAGACAAAGGGTGCAGAGGACTCGGGCCAGATCAAATCTTGATGGGGATCTTCTCTGGACTGGATCGAGAGACTGGGAATTTATAGGAGCATCTAGTATAACTGCAGATACTAATGTAGCACACTGGGTCTTCCATTTCCACTGCACTGCATTGCTTCATTGGTCCTCGaaagctacagtacagtactacaGGGTCTCCAGCTCTGGTTCTGGAGAGACACAGTATAAGCCAGTACAGTAGGTTctccagtcctggtcctggagagacactgTAGAGTACGGCAGTAGTGTTGATACTACAGGACTGGACTCAGCGAGGGAGGGATTCAGTCTAAAACACAGTGCAATGGGGATATTTGAATTCTGTGCATTATAATGGGTCAAGGGCCCAGAGGTGGAAGTGTACAATGTTAAATGTTGGCCCCAGCAGGGGGATTTAACATTGGCCCACAGTTCTCCCTGAATAGGCAGGAAAGTCTGGTAACGTGGTGACCAGGAGCAGGGATCTACTACTAACTTCAGGTAAAAGTCAAGTACTACTGATAACTGATACCAAATACCAATACAGATACCAATACTGCAAACTGATATCAAAGTCTCATccttcatgttttttaatttgtttttgtattttgtgttggtTACGTAATATAATTATCGCTtgcacaacaggaaaacactgGAGCTATACTGTTATTTTTGGGACTTCCTTCTTCAAaaggggctgtgtgtgtgtgagaatgtgtgagtgtgtgactgtgtgtgtgttggagggtGATGCACTGTACACCAGTAATTGATAAGACAGTTTTCTGTGCTTGtacaaaaagaaataataataaaacaaaatggattgcGGGCTcagggatgaaaaaaaaatcattgatTTTAATCTCAGAAAGCCCaaattattgctttcaaatccTGATTGTTGTTactatttattacactgtttgGGGGAATACAGCCTCTTGTAAAAGCCAATGTCTAGAGAGGGTGAAGTGAAACTCTATACCGttgcacatttttattaatacatttgcctTCTTATGTCTGAGTAGGGGTGAAGGGGAAGGTTTTTTGttggggaagaaaaacacaccacCCATGACGGGACATTGGAGATTGTGTCGGGGGCGGGTATTTGGAACTCGAGAGTTATACTGTGGCGTTTTTCTAGCTCTGTGATTGGTGAAGGCTGACGATGCCTCCGCTCCGATTAGCTAGCAGCTTGAATGTGTGTGCGCTGAAGATCACAGGGGGAATGAAGTTAACCTCAGTAGGTCAGAAAGAACACCTGTCATTTAACTGGATAAATAAGCATATGCAACAGCATAGTGGCTTTCACATCACCCTGTATGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92276 lncRNA upstream 22958 37683315 ~ 37683542 (+) True G73896
TU92275 lncRNA upstream 24861 37681367 ~ 37681639 (+) True G73895
TU92270 lncRNA upstream 58620 37647603 ~ 37647880 (+) True G73890
TU92249 lncRNA upstream 104089 37598728 ~ 37602411 (+) True G73872
TU92250 lncRNA upstream 104089 37598757 ~ 37602411 (+) False G73872
TU92269 lncRNA downstream 96 37708286 ~ 37708801 (+) True G73889
TU92294 lncRNA downstream 37793 37745983 ~ 37746187 (+) True G73914
TU92298 lncRNA downstream 112896 37821086 ~ 37821362 (+) True G73917
TU92322 lncRNA downstream 168071 37876261 ~ 37884688 (+) True G73939
TU92327 lncRNA downstream 224332 37932522 ~ 37932795 (+) True G73944
AMCG00014862 mRNA upstream 148 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014853 mRNA upstream 676438 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014852 mRNA upstream 791997 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014850 mRNA upstream 973247 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 1408777 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014864 mRNA downstream 45605 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 46669 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 193607 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 227401 37935591 ~ 37944752 (+) True AMCG00014867
AMCG00014869 mRNA downstream 246180 37954370 ~ 37956516 (+) True AMCG00014869
TU92227 other upstream 188094 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2311851 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2746053 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2925910 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3467100 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 724184 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1102503 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1628078 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 1898697 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 2156892 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile