RNA id: TU92322



Basic Information


Item Value
RNA id TU92322
length 918
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G73939
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37876261 ~ 37884688 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTAACCCATCCCCTTTCCCTCtgcatccctccctccctccctctctccccttcagCTCACCTCCAGCCAGTCTCTGTTCACTCGCCTCAGCAGGAAGATCACCTCTCCCGCACTGAAGCTCAGCTCCAGTCGCCCGCTGCCGTTAAACCCGAACAGCGCCTGGAGAGTTGTATTGCAGGGCGCTCACCGGGCAGGGTGGGCAGGGTGCAGGTGTAGGTGCCGCTCTGTCTGTCAGGGGAGAACTTCTGCTCCAGCTCCTGGTGCAGAGAGAAGAAGCTGCGATAGCGCCGGTAGATCAGGTACTTGCTGCCCCCCTTCGTCTTCACCTCGATCACAAAcatctgcacacacagacacagacgcagagagacacacagacatacaaataTAGAGAGAAACtcagacacagatacacaaagagacacatgggcacacagacacagagagagacacacacagatggagagacacacagacacagatacacagagagacagaccggcacacagacacacacacacacacacacacaaacacagagagacacacagaaacacacagacacagagagatacacagacacagagaaacacacagacacaaagagacacacagagacatacagaaacacacacacacacacagagacatgaaGACATGgagagacatacacacacagaaacaaacagacacaaagagatGTACAAAGACACAAAGGTTGGGTTAGTTGATCAATATTCTTCAACTGAAGCAGTCCTAAGAACAGGCCTGTTGTTTTGAGAGCAGGGGGAGGGAGCTGTGACCCCACTGGGGGGGTGTGGATGTCTCACATAGTAGCTTGTGAAGCCCCTCTTCTCCTCTATGTCTGCAATTGTTGCTGAGATGGGGATTTCCTCTGGGAGCTGGTCAAAAtcact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92298 lncRNA upstream 54899 37821086 ~ 37821362 (+) True G73917
TU92294 lncRNA upstream 130074 37745983 ~ 37746187 (+) True G73914
TU92269 lncRNA upstream 167460 37708286 ~ 37708801 (+) True G73889
TU92268 lncRNA upstream 168071 37706500 ~ 37708190 (+) True G73888
TU92276 lncRNA upstream 192719 37683315 ~ 37683542 (+) True G73896
TU92327 lncRNA downstream 47834 37932522 ~ 37932795 (+) True G73944
TU92477 lncRNA downstream 426788 38311476 ~ 38313617 (+) True G74067
TU92590 lncRNA downstream 764234 38648922 ~ 38649249 (+) True G74157
TU92592 lncRNA downstream 766709 38651397 ~ 38655398 (+) True G74159
TU92634 lncRNA downstream 827020 38711708 ~ 38712076 (+) True G74192
AMCG00014863 mRNA upstream 120413 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014864 mRNA upstream 121738 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014862 mRNA upstream 169909 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014853 mRNA upstream 846199 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014852 mRNA upstream 961758 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014870 mRNA downstream 17109 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 50903 37935591 ~ 37944752 (+) True AMCG00014867
AMCG00014869 mRNA downstream 69682 37954370 ~ 37956516 (+) True AMCG00014869
AMCG00014868 mRNA downstream 80689 37965377 ~ 37966906 (+) True AMCG00014868
AMCG00014873 mRNA downstream 138901 38023589 ~ 38027260 (+) True AMCG00014873
TU92227 other upstream 357855 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2481612 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2915814 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3095671 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3636861 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 547686 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 926005 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1451580 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 1722199 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1980394 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile