RNA id: TU92433


Basic Information

Item Value
RNA id TU92433
length 1242
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G74030
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38177974 ~ 38180598 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttgtattatttatttatttattatgaagagacatacagagacttgcttaaaattaaataaaattacaaataaagcaaaacaaaacaaaaaaaatctttagaaCTCTatccatatttatatatgtacatagtTGGtggtccctctctctctctctctctctctctctctctccccctttcatCCCTCCATCTTCTAGTGCTGGCGTTTGGGTTTAAAGTGCACATGTGAACCATCAGCTCTATATGGGTGCAAACTTCTTGGCCTGAGCTCTGACTCTCTTCTCATACTCCATCCTGTTCTGAcagtatatagtgtatgccTCTGCCTGTGCTGGGTCCTGGATGTTTGGTTCATTCAGCAGCTCCTGGACTCCCAATAGGATCTGTTTGATTGTGATGGCAGGTCTCCAGTCTTTGTCCTCCTCCAGGATGGACAGACAAACAGTGCCGGACGGATAGACGTTGGGGTGGAAGATGGGAGGCTCGAATTTACATTTGGGCGGTGACGAGGGGTAATCATCCTTAAACAGCATCCTGAGTTTGTActgccctccctcccacagAGTCTGTGGAGACAAGAGACCATGAATGAGCCAGCACTGTATAGATTAAAGTGCAGTATAGTATGGGGGCCCAGTCTcgagccagtgctgtgtggactatagtattgTTTAGTATAGGGCCTAGTTGGACAGATACTCACCCCTTTCTTGCCTGGAATGGCACATTCCCAGTTCATAAGATTCAGGGTGCCATCAGCATTCTTGGTGGGCACTGCCACAAACCCCTAGGGTAGGTACACAACAAGTAATTACAGGGGCTCAGTTggtctcagtgttacagtgttacagtatagtcagacacacagagatacaaaGCCTTAGAAAGACAAAGATACAGGCagtgacagaaagagagagagactcacaaAGGGATGGTCCTTGCGCCAGGCTTTGCGTTCCTGCGCCAGTCTGCTGAGAGCAATCCCGGACATTGCTGCTCATCCACACCCCCTGCTTAAAAATCCGAAATCTAatatttaagataaataaaagttaaacaGACAAGCTATACTGTCGCAAAGGTCTCCACCCTCCTTTGTTCCCTCTCTATGTCTTCTGGCCgattctctatctctctttcaCTCCCGCTCTCTTTCGTGTGACAGTACTGAAACTAGTTAAGAGCGATCGCTGCTGTCAAATTGCTCCGGGGCTGGAAAGGGGGGAAAGTGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92368 lncRNA downstream 106357 38063347 ~ 38071617 (-) True G73980
TU92314 lncRNA downstream 333631 37843170 ~ 37844343 (-) False AMCG00014865
TU92299 lncRNA downstream 351272 37826479 ~ 37826702 (-) True G73918
TU92297 lncRNA downstream 394399 37779333 ~ 37783575 (-) False G73916
TU92291 lncRNA downstream 473926 37703846 ~ 37704048 (-) True G73911
TU92461 lncRNA upstream 100839 38281437 ~ 38283517 (-) True G74052
TU92512 lncRNA upstream 128487 38309085 ~ 38340216 (-) True G74093
TU92501 lncRNA upstream 162724 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA upstream 162724 38343322 ~ 38350291 (-) False G74087
TU92556 lncRNA upstream 307664 38488262 ~ 38488479 (-) True G74128
AMCG00014879 mRNA downstream 17887 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014878 mRNA downstream 49229 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014874 mRNA downstream 125862 38047486 ~ 38052112 (-) True AMCG00014874
AMCG00014875 mRNA downstream 137923 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014871 mRNA downstream 223662 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014883 mRNA upstream 80932 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014885 mRNA upstream 122454 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014886 mRNA upstream 149533 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014888 mRNA upstream 183304 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014889 mRNA upstream 234804 38415402 ~ 38423841 (-) True AMCG00014889
TU92296 other downstream 394399 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 852667 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1784481 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1923787 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1995623 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 162724 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 231562 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 251665 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 309725 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 416770 38597368 ~ 38644538 (-) False G74160

Expression Profile